Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
TRAIPQ9BWF2 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 AL049637.2-201ENST00000641778 930 ntBASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TRAIPQ9BWF2 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRAIPQ9BWF2 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
TRAIPQ9BWF2 PLK5-205ENST00000642079 1969 ntBASIC21.83■■□□□ 1.09
TRAIPQ9BWF2 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRAIPQ9BWF2 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TRAIPQ9BWF2 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.83■■□□□ 1.09
TRAIPQ9BWF2 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.83■■□□□ 1.09
TRAIPQ9BWF2 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.83■■□□□ 1.09
TRAIPQ9BWF2 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.83■■□□□ 1.09
TRAIPQ9BWF2 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TRAIPQ9BWF2 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.83■■□□□ 1.09
TRAIPQ9BWF2 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.83■■□□□ 1.09
TRAIPQ9BWF2 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.83■■□□□ 1.09
TRAIPQ9BWF2 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TRAIPQ9BWF2 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.83■■□□□ 1.09
TRAIPQ9BWF2 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TRAIPQ9BWF2 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TRAIPQ9BWF2 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
TRAIPQ9BWF2 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TRAIPQ9BWF2 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAIPQ9BWF2 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 HLA-G-202ENST00000376815 851 ntBASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 HLA-G-203ENST00000376818 1127 ntBASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
TRAIPQ9BWF2 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms