Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
IFT140Q96RY7 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
IFT140Q96RY7 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC33.34■■■□□ 2.93
IFT140Q96RY7 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC33.34■■■□□ 2.93
IFT140Q96RY7 AC008040.2-201ENST00000461049 708 ntBASIC33.34■■■□□ 2.93
IFT140Q96RY7 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC33.34■■■□□ 2.93
IFT140Q96RY7 AL441883.1-201ENST00000566170 1045 ntBASIC33.34■■■□□ 2.93
IFT140Q96RY7 IRF5-214ENST00000613821 595 ntTSL 5 BASIC33.34■■■□□ 2.93
IFT140Q96RY7 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC33.34■■■□□ 2.93
IFT140Q96RY7 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC33.34■■■□□ 2.93
IFT140Q96RY7 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC33.34■■■□□ 2.93
IFT140Q96RY7 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC33.34■■■□□ 2.93
IFT140Q96RY7 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
IFT140Q96RY7 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC33.34■■■□□ 2.93
IFT140Q96RY7 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC33.33■■■□□ 2.93
IFT140Q96RY7 KRT8P20-201ENST00000423953 1409 ntBASIC33.33■■■□□ 2.93
IFT140Q96RY7 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC33.33■■■□□ 2.93
IFT140Q96RY7 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC33.33■■■□□ 2.93
IFT140Q96RY7 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC33.33■■■□□ 2.93
IFT140Q96RY7 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC33.33■■■□□ 2.93
IFT140Q96RY7 KRT18P38-201ENST00000449496 1282 ntBASIC33.33■■■□□ 2.93
IFT140Q96RY7 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC33.33■■■□□ 2.93
IFT140Q96RY7 STAC-204ENST00000457375 1366 ntTSL 2 BASIC33.33■■■□□ 2.93
IFT140Q96RY7 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC33.33■■■□□ 2.93
IFT140Q96RY7 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC33.33■■■□□ 2.93
IFT140Q96RY7 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC33.32■■■□□ 2.93
IFT140Q96RY7 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC33.32■■■□□ 2.93
IFT140Q96RY7 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC33.32■■■□□ 2.93
IFT140Q96RY7 GXYLT1P6-201ENST00000456472 1187 ntBASIC33.32■■■□□ 2.92
IFT140Q96RY7 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC33.32■■■□□ 2.92
IFT140Q96RY7 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC33.32■■■□□ 2.92
IFT140Q96RY7 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC33.32■■■□□ 2.92
IFT140Q96RY7 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC33.32■■■□□ 2.92
IFT140Q96RY7 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC33.32■■■□□ 2.92
IFT140Q96RY7 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
IFT140Q96RY7 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC33.31■■■□□ 2.92
IFT140Q96RY7 TSPY21P-201ENST00000433481 731 ntBASIC33.31■■■□□ 2.92
IFT140Q96RY7 TSPY23P-201ENST00000440136 739 ntBASIC33.31■■■□□ 2.92
IFT140Q96RY7 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC33.31■■■□□ 2.92
IFT140Q96RY7 AL023803.3-201ENST00000615559 522 ntBASIC33.31■■■□□ 2.92
IFT140Q96RY7 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
IFT140Q96RY7 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
IFT140Q96RY7 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC33.31■■■□□ 2.92
IFT140Q96RY7 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC33.31■■■□□ 2.92
IFT140Q96RY7 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
IFT140Q96RY7 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC33.31■■■□□ 2.92
IFT140Q96RY7 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC33.31■■■□□ 2.92
IFT140Q96RY7 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC33.31■■■□□ 2.92
IFT140Q96RY7 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
IFT140Q96RY7 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC33.3■■■□□ 2.92
IFT140Q96RY7 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
IFT140Q96RY7 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
IFT140Q96RY7 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC33.3■■■□□ 2.92
IFT140Q96RY7 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
IFT140Q96RY7 ATP5G2P1-201ENST00000433580 426 ntBASIC33.3■■■□□ 2.92
IFT140Q96RY7 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC33.3■■■□□ 2.92
IFT140Q96RY7 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC33.3■■■□□ 2.92
IFT140Q96RY7 AL136038.3-201ENST00000561909 1096 ntBASIC33.3■■■□□ 2.92
IFT140Q96RY7 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
IFT140Q96RY7 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC33.3■■■□□ 2.92
IFT140Q96RY7 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC33.3■■■□□ 2.92
IFT140Q96RY7 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
IFT140Q96RY7 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
IFT140Q96RY7 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC33.29■■■□□ 2.92
IFT140Q96RY7 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC33.29■■■□□ 2.92
IFT140Q96RY7 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC33.29■■■□□ 2.92
IFT140Q96RY7 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC33.29■■■□□ 2.92
IFT140Q96RY7 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
IFT140Q96RY7 PTPA-216ENST00000432651 857 ntTSL 2 BASIC33.29■■■□□ 2.92
IFT140Q96RY7 FDX1P1-201ENST00000449115 551 ntBASIC33.29■■■□□ 2.92
IFT140Q96RY7 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC33.29■■■□□ 2.92
IFT140Q96RY7 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
IFT140Q96RY7 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC33.29■■■□□ 2.92
IFT140Q96RY7 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC33.29■■■□□ 2.92
IFT140Q96RY7 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC33.29■■■□□ 2.92
IFT140Q96RY7 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC33.28■■■□□ 2.92
IFT140Q96RY7 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
IFT140Q96RY7 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
IFT140Q96RY7 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC33.28■■■□□ 2.92
IFT140Q96RY7 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC33.28■■■□□ 2.92
IFT140Q96RY7 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC33.28■■■□□ 2.92
IFT140Q96RY7 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC33.28■■■□□ 2.92
IFT140Q96RY7 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC33.28■■■□□ 2.92
IFT140Q96RY7 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
IFT140Q96RY7 STK25-204ENST00000405585 1643 ntTSL 2 BASIC33.27■■■□□ 2.92
IFT140Q96RY7 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC33.27■■■□□ 2.92
IFT140Q96RY7 AP000347.1-202ENST00000435868 847 ntBASIC33.27■■■□□ 2.92
IFT140Q96RY7 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC33.27■■■□□ 2.92
IFT140Q96RY7 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC33.27■■■□□ 2.92
IFT140Q96RY7 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC33.27■■■□□ 2.92
IFT140Q96RY7 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC33.27■■■□□ 2.92
IFT140Q96RY7 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC33.27■■■□□ 2.92
IFT140Q96RY7 AL023973.1-201ENST00000624619 620 ntBASIC33.27■■■□□ 2.92
IFT140Q96RY7 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC33.27■■■□□ 2.92
IFT140Q96RY7 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC33.27■■■□□ 2.92
IFT140Q96RY7 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
IFT140Q96RY7 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC33.27■■■□□ 2.92
IFT140Q96RY7 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC33.27■■■□□ 2.92
IFT140Q96RY7 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC33.26■■■□□ 2.92
IFT140Q96RY7 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.92
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms