Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 AP000593.1-201ENST00000393668 712 ntBASIC19.86■□□□□ 0.77
VPS13AQ96RL7 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 CR769767.2-201ENST00000622735 460 ntBASIC19.86■□□□□ 0.77
VPS13AQ96RL7 AC127496.7-201ENST00000625110 1798 ntBASIC19.86■□□□□ 0.77
VPS13AQ96RL7 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 FSCN1P1-201ENST00000568912 1481 ntBASIC19.86■□□□□ 0.77
VPS13AQ96RL7 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 AC083849.1-201ENST00000615227 514 ntBASIC19.85■□□□□ 0.77
VPS13AQ96RL7 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 AL445675.2-201ENST00000620291 557 ntBASIC19.85■□□□□ 0.77
VPS13AQ96RL7 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS13AQ96RL7 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS13AQ96RL7 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS13AQ96RL7 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
VPS13AQ96RL7 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS13AQ96RL7 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS13AQ96RL7 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.84■□□□□ 0.77
VPS13AQ96RL7 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.84■□□□□ 0.77
VPS13AQ96RL7 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
VPS13AQ96RL7 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS13AQ96RL7 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS13AQ96RL7 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
VPS13AQ96RL7 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS13AQ96RL7 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.83■□□□□ 0.77
VPS13AQ96RL7 KRT17P6-201ENST00000453795 1220 ntBASIC19.83■□□□□ 0.77
VPS13AQ96RL7 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
VPS13AQ96RL7 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.83■□□□□ 0.77
VPS13AQ96RL7 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS13AQ96RL7 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
VPS13AQ96RL7 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.83■□□□□ 0.77
VPS13AQ96RL7 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS13AQ96RL7 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
VPS13AQ96RL7 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS13AQ96RL7 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.83■□□□□ 0.77
VPS13AQ96RL7 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS13AQ96RL7 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.83■□□□□ 0.77
VPS13AQ96RL7 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.83■□□□□ 0.76
VPS13AQ96RL7 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.83■□□□□ 0.76
VPS13AQ96RL7 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.83■□□□□ 0.76
VPS13AQ96RL7 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.83■□□□□ 0.76
VPS13AQ96RL7 AC139530.3-201ENST00000620344 690 ntBASIC19.83■□□□□ 0.76
VPS13AQ96RL7 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS13AQ96RL7 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS13AQ96RL7 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS13AQ96RL7 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.83■□□□□ 0.76
VPS13AQ96RL7 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
VPS13AQ96RL7 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS13AQ96RL7 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.83■□□□□ 0.76
VPS13AQ96RL7 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.83■□□□□ 0.76
VPS13AQ96RL7 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS13AQ96RL7 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.83■□□□□ 0.76
VPS13AQ96RL7 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 CALM1-205ENST00000553542 877 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.82■□□□□ 0.76
VPS13AQ96RL7 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS13AQ96RL7 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS13AQ96RL7 HMGA1P5-201ENST00000412453 271 ntBASIC19.81■□□□□ 0.76
VPS13AQ96RL7 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms