Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC20.43■□□□□ 0.86
TTC28Q96AY4 C1QL1P1-201ENST00000568105 661 ntBASIC20.43■□□□□ 0.86
TTC28Q96AY4 AC027796.2-201ENST00000575326 344 ntBASIC20.43■□□□□ 0.86
TTC28Q96AY4 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TTC28Q96AY4 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TTC28Q96AY4 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.43■□□□□ 0.86
TTC28Q96AY4 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
TTC28Q96AY4 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TTC28Q96AY4 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TTC28Q96AY4 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
TTC28Q96AY4 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TTC28Q96AY4 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.43■□□□□ 0.86
TTC28Q96AY4 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TTC28Q96AY4 AC139530.1-201ENST00000575312 1977 ntBASIC20.43■□□□□ 0.86
TTC28Q96AY4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.43■□□□□ 0.86
TTC28Q96AY4 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TTC28Q96AY4 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TTC28Q96AY4 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TTC28Q96AY4 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TTC28Q96AY4 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.42■□□□□ 0.86
TTC28Q96AY4 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
TTC28Q96AY4 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.42■□□□□ 0.86
TTC28Q96AY4 BX842568.4-201ENST00000421222 227 ntBASIC20.42■□□□□ 0.86
TTC28Q96AY4 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TTC28Q96AY4 SLC25A1P1-201ENST00000528351 927 ntBASIC20.42■□□□□ 0.86
TTC28Q96AY4 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.42■□□□□ 0.86
TTC28Q96AY4 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TTC28Q96AY4 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TTC28Q96AY4 RCC2P6-201ENST00000526625 1557 ntBASIC20.42■□□□□ 0.86
TTC28Q96AY4 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TTC28Q96AY4 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
TTC28Q96AY4 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
TTC28Q96AY4 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
TTC28Q96AY4 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.41■□□□□ 0.86
TTC28Q96AY4 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.41■□□□□ 0.86
TTC28Q96AY4 AC142381.3-201ENST00000568208 1670 ntBASIC20.41■□□□□ 0.86
TTC28Q96AY4 AC026471.6-201ENST00000622954 1905 ntBASIC20.41■□□□□ 0.86
TTC28Q96AY4 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.41■□□□□ 0.86
TTC28Q96AY4 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.41■□□□□ 0.86
TTC28Q96AY4 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TTC28Q96AY4 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.41■□□□□ 0.86
TTC28Q96AY4 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
TTC28Q96AY4 RNA5SP419-201ENST00000515908 135 ntBASIC20.41■□□□□ 0.86
TTC28Q96AY4 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.41■□□□□ 0.86
TTC28Q96AY4 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
TTC28Q96AY4 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TTC28Q96AY4 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
TTC28Q96AY4 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TTC28Q96AY4 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TTC28Q96AY4 AC008040.2-201ENST00000461049 708 ntBASIC20.41■□□□□ 0.86
TTC28Q96AY4 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.41■□□□□ 0.86
TTC28Q96AY4 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TTC28Q96AY4 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TTC28Q96AY4 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TTC28Q96AY4 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.4■□□□□ 0.86
TTC28Q96AY4 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TTC28Q96AY4 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TTC28Q96AY4 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TTC28Q96AY4 TSPY19P-201ENST00000418461 509 ntBASIC20.4■□□□□ 0.86
TTC28Q96AY4 TSPY18P-201ENST00000441642 509 ntBASIC20.4■□□□□ 0.86
TTC28Q96AY4 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.4■□□□□ 0.86
TTC28Q96AY4 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.4■□□□□ 0.86
TTC28Q96AY4 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
TTC28Q96AY4 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TTC28Q96AY4 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
TTC28Q96AY4 AC092329.2-201ENST00000598402 547 ntBASIC20.4■□□□□ 0.86
TTC28Q96AY4 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TTC28Q96AY4 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.4■□□□□ 0.86
TTC28Q96AY4 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TTC28Q96AY4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TTC28Q96AY4 MFAP1P1-201ENST00000442257 1255 ntBASIC20.39■□□□□ 0.86
TTC28Q96AY4 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.39■□□□□ 0.86
TTC28Q96AY4 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TTC28Q96AY4 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.39■□□□□ 0.86
TTC28Q96AY4 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TTC28Q96AY4 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TTC28Q96AY4 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
TTC28Q96AY4 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TTC28Q96AY4 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.39■□□□□ 0.85
TTC28Q96AY4 SPDYE13P-201ENST00000445314 798 ntBASIC20.39■□□□□ 0.85
TTC28Q96AY4 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.39■□□□□ 0.85
TTC28Q96AY4 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.39■□□□□ 0.85
TTC28Q96AY4 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TTC28Q96AY4 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TTC28Q96AY4 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TTC28Q96AY4 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TTC28Q96AY4 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TTC28Q96AY4 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
TTC28Q96AY4 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.38■□□□□ 0.85
TTC28Q96AY4 AL590627.1-203ENST00000421194 1026 ntBASIC20.38■□□□□ 0.85
TTC28Q96AY4 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.38■□□□□ 0.85
TTC28Q96AY4 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.38■□□□□ 0.85
TTC28Q96AY4 ZNF444P1-201ENST00000559497 298 ntBASIC20.38■□□□□ 0.85
TTC28Q96AY4 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.38■□□□□ 0.85
TTC28Q96AY4 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TTC28Q96AY4 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TTC28Q96AY4 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TTC28Q96AY4 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TTC28Q96AY4 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
TTC28Q96AY4 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms