Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4AQ8WYN0 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
ATG4AQ8WYN0 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
ATG4AQ8WYN0 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
ATG4AQ8WYN0 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
ATG4AQ8WYN0 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
ATG4AQ8WYN0 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
ATG4AQ8WYN0 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
ATG4AQ8WYN0 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.64■□□□□ 0.9
ATG4AQ8WYN0 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 MCRIP2P1-201ENST00000394346 511 ntBASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 AC005332.7-201ENST00000614046 2005 ntBASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATG4AQ8WYN0 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4AQ8WYN0 KRT8P17-201ENST00000453110 1448 ntBASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 AC016769.1-201ENST00000409132 1010 ntBASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 AC105020.6-201ENST00000621523 1217 ntBASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 AC018445.3-201ENST00000624177 1945 ntBASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4AQ8WYN0 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 AL355472.2-201ENST00000422958 438 ntBASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 CYP2T1P-201ENST00000432607 1285 ntBASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.61■□□□□ 0.89
ATG4AQ8WYN0 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms