Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.48■□□□□ 0.71
LMX1AQ8TE12 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.48■□□□□ 0.71
LMX1AQ8TE12 AC073195.1-201ENST00000607241 877 ntBASIC19.48■□□□□ 0.71
LMX1AQ8TE12 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LMX1AQ8TE12 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LMX1AQ8TE12 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.48■□□□□ 0.71
LMX1AQ8TE12 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.47■□□□□ 0.71
LMX1AQ8TE12 AC026310.3-201ENST00000625186 2373 ntBASIC19.47■□□□□ 0.71
LMX1AQ8TE12 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 FAM210CP-201ENST00000445714 574 ntBASIC19.46■□□□□ 0.71
LMX1AQ8TE12 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 AC007225.1-201ENST00000566331 1836 ntBASIC19.46■□□□□ 0.71
LMX1AQ8TE12 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1AQ8TE12 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 KRT18P21-201ENST00000515767 1272 ntBASIC19.45■□□□□ 0.7
LMX1AQ8TE12 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LMX1AQ8TE12 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LMX1AQ8TE12 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LMX1AQ8TE12 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms