Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC6.14□□□□□ -1.43
SYNE1Q8NF91 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SYNE1Q8NF91 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC6.14□□□□□ -1.43
SYNE1Q8NF91 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC6.14□□□□□ -1.43
SYNE1Q8NF91 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
SYNE1Q8NF91 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
SYNE1Q8NF91 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
SYNE1Q8NF91 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 GXYLT1P3-201ENST00000453058 1193 ntBASIC6.13□□□□□ -1.43
SYNE1Q8NF91 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 MIR4785-201ENST00000585005 73 ntBASIC6.13□□□□□ -1.43
SYNE1Q8NF91 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 AC026471.5-201ENST00000615068 467 ntBASIC6.13□□□□□ -1.43
SYNE1Q8NF91 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 AC087633.2-202ENST00000565166 1439 ntBASIC6.13□□□□□ -1.43
SYNE1Q8NF91 AL157384.1-201ENST00000445995 2473 ntBASIC6.13□□□□□ -1.43
SYNE1Q8NF91 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 AC097493.4-201ENST00000641197 219 ntBASIC6.13□□□□□ -1.43
SYNE1Q8NF91 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 FAM99A-202ENST00000538190 1989 ntBASIC6.13□□□□□ -1.43
SYNE1Q8NF91 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 SERP1-205ENST00000487153 657 ntTSL 4 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SYNE1Q8NF91 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 F2R-202ENST00000505600 442 ntTSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 RN7SL850P-201ENST00000579959 291 ntBASIC6.12□□□□□ -1.43
SYNE1Q8NF91 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 STK25-205ENST00000405883 1904 ntTSL 2 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 KRT8P36-201ENST00000489121 1440 ntBASIC6.12□□□□□ -1.43
SYNE1Q8NF91 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC6.12□□□□□ -1.43
SYNE1Q8NF91 AC127496.7-201ENST00000625110 1798 ntBASIC6.12□□□□□ -1.43
SYNE1Q8NF91 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms