Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC22.14■■□□□ 1.13
CCDC65Q8IXS2 RHEB-204ENST00000472642 900 ntTSL 3 BASIC22.14■■□□□ 1.13
CCDC65Q8IXS2 AC097658.1-201ENST00000475555 843 ntBASIC22.14■■□□□ 1.13
CCDC65Q8IXS2 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC22.14■■□□□ 1.13
CCDC65Q8IXS2 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC22.14■■□□□ 1.13
CCDC65Q8IXS2 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC22.14■■□□□ 1.13
CCDC65Q8IXS2 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC65Q8IXS2 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC65Q8IXS2 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC65Q8IXS2 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC65Q8IXS2 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC65Q8IXS2 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 MOK-225ENST00000522867 1883 ntTSL 5 BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 GOLGA2P11-201ENST00000562660 1621 ntBASIC22.13■■□□□ 1.13
CCDC65Q8IXS2 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
CCDC65Q8IXS2 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
CCDC65Q8IXS2 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC65Q8IXS2 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC65Q8IXS2 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
CCDC65Q8IXS2 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC22.12■■□□□ 1.13
CCDC65Q8IXS2 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
CCDC65Q8IXS2 MYC-209ENST00000641252 345 ntBASIC22.12■■□□□ 1.13
CCDC65Q8IXS2 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC65Q8IXS2 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC22.12■■□□□ 1.13
CCDC65Q8IXS2 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC65Q8IXS2 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 AC073210.2-201ENST00000430369 194 ntBASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 AC098934.4-201ENST00000564127 592 ntBASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 AC133041.1-202ENST00000642053 222 ntBASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC65Q8IXS2 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 TMEM179-206ENST00000616017 1645 ntBASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 LBX2-AS1-202ENST00000603175 2083 ntBASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 AL390719.1-204ENST00000412397 1219 ntBASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 AC142086.2-201ENST00000569753 217 ntBASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC22.1■■□□□ 1.13
CCDC65Q8IXS2 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC65Q8IXS2 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC22.09■■□□□ 1.13
CCDC65Q8IXS2 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC65Q8IXS2 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC22.09■■□□□ 1.13
CCDC65Q8IXS2 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC65Q8IXS2 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC22.09■■□□□ 1.13
CCDC65Q8IXS2 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC65Q8IXS2 AC069152.1-201ENST00000438030 544 ntBASIC22.09■■□□□ 1.13
CCDC65Q8IXS2 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC22.09■■□□□ 1.13
CCDC65Q8IXS2 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
CCDC65Q8IXS2 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC65Q8IXS2 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC65Q8IXS2 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms