Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 KRT18P22-201ENST00000402024 1347 ntBASIC19.16■□□□□ 0.66
COL28A1Q2UY09 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 SLC25A3P1-201ENST00000443844 931 ntBASIC19.15■□□□□ 0.66
COL28A1Q2UY09 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 AC105020.6-201ENST00000621523 1217 ntBASIC19.15■□□□□ 0.66
COL28A1Q2UY09 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL28A1Q2UY09 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.14■□□□□ 0.66
COL28A1Q2UY09 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL28A1Q2UY09 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.14■□□□□ 0.66
COL28A1Q2UY09 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL28A1Q2UY09 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.14■□□□□ 0.66
COL28A1Q2UY09 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 UNC93B2-201ENST00000285383 730 ntBASIC19.14■□□□□ 0.65
COL28A1Q2UY09 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 NAPSB-206ENST00000562112 1266 ntBASIC19.14■□□□□ 0.65
COL28A1Q2UY09 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 AL358472.4-201ENST00000633140 710 ntBASIC19.14■□□□□ 0.65
COL28A1Q2UY09 HTR7P1-201ENST00000538670 1336 ntBASIC19.14■□□□□ 0.65
COL28A1Q2UY09 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 AC087633.2-202ENST00000565166 1439 ntBASIC19.14■□□□□ 0.65
COL28A1Q2UY09 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL28A1Q2UY09 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 AL031963.3-201ENST00000606441 850 ntBASIC19.13■□□□□ 0.65
COL28A1Q2UY09 AC091076.1-201ENST00000610741 619 ntBASIC19.13■□□□□ 0.65
COL28A1Q2UY09 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.13■□□□□ 0.65
COL28A1Q2UY09 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL28A1Q2UY09 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms