Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 EWSR1-209ENST00000415761 587 ntTSL 34.23□□□□□ -1.732e-12■■□□□ 12
U2AF1Q01081 SLC20A2-212ENST00000523340 1265 ntTSL 231.66■■■□□ 2.661e-8■■□□□ 12
U2AF1Q01081 WDR45B-203ENST00000571817 889 ntTSL 327.24■■□□□ 1.951e-8■■□□□ 12
U2AF1Q01081 SLC20A2-214ENST00000524237 545 ntTSL 421.33■■□□□ 1.011e-8■■□□□ 12
U2AF1Q01081 WDR45B-208ENST00000574828 765 ntTSL 321.22■□□□□ 0.991e-8■■□□□ 12
U2AF1Q01081 WDR45B-205ENST00000572583 2322 ntTSL 1 (best)20.23■□□□□ 0.831e-8■■□□□ 12
U2AF1Q01081 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.821e-8■■□□□ 12
U2AF1Q01081 WDR45B-206ENST00000573616 896 ntTSL 519.07■□□□□ 0.641e-8■■□□□ 12
U2AF1Q01081 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.61e-8■■□□□ 12
U2AF1Q01081 SLC20A2-201ENST00000342228 3657 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.241e-8■■□□□ 12
U2AF1Q01081 WDR45B-204ENST00000571835 869 ntTSL 511.76□□□□□ -0.531e-8■■□□□ 12
U2AF1Q01081 SLC20A2-203ENST00000518384 557 ntTSL 410.34□□□□□ -0.751e-8■■□□□ 12
U2AF1Q01081 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.761e-8■■□□□ 12
U2AF1Q01081 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.413e-6■■□□□ 11.9
U2AF1Q01081 NUDT4-207ENST00000550056 531 ntTSL 421.27■■□□□ 13e-6■■□□□ 11.9
U2AF1Q01081 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.363e-6■■□□□ 11.9
U2AF1Q01081 NUDT4-203ENST00000546925 569 ntTSL 415.82■□□□□ 0.123e-6■■□□□ 11.9
U2AF1Q01081 NUDT4-204ENST00000547014 1419 ntTSL 2 BASIC13.96□□□□□ -0.183e-6■■□□□ 11.9
U2AF1Q01081 NUDT4-205ENST00000548662 765 ntTSL 3 BASIC11.59□□□□□ -0.553e-6■■□□□ 11.9
U2AF1Q01081 NUDT4-206ENST00000549992 3607 ntTSL 1 (best) BASIC10.53□□□□□ -0.723e-6■■□□□ 11.9
U2AF1Q01081 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.511e-7■■□□□ 11.9
U2AF1Q01081 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC18.18■□□□□ 0.51e-7■■□□□ 11.9
U2AF1Q01081 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC17.77■□□□□ 0.431e-7■■□□□ 11.9
U2AF1Q01081 NUP98-205ENST00000397007 3698 ntTSL 1 (best) BASIC14.15□□□□□ -0.141e-7■■□□□ 11.9
U2AF1Q01081 NUP98-206ENST00000397013 939 ntTSL 510.72□□□□□ -0.691e-7■■□□□ 11.9
U2AF1Q01081 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC10.14□□□□□ -0.791e-7■■□□□ 11.9
U2AF1Q01081 NUP98-214ENST00000527104 705 ntTSL 39.96□□□□□ -0.821e-7■■□□□ 11.9
U2AF1Q01081 NUP98-216ENST00000529379 536 ntTSL 36.38□□□□□ -1.391e-7■■□□□ 11.9
U2AF1Q01081 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC17.27■□□□□ 0.362e-10■■□□□ 11.9
U2AF1Q01081 AC138409.2-202ENST00000507274 458 ntBASIC7.31□□□□□ -1.242e-10■■□□□ 11.9
U2AF1Q01081 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC6.75□□□□□ -1.332e-10■■□□□ 11.9
U2AF1Q01081 SRRM2-218ENST00000574331 1759 ntTSL 223.1■■□□□ 1.291e-31■■□□□ 11.9
U2AF1Q01081 EPB41L2-208ENST00000524581 3090 ntTSL 1 (best) BASIC14.36□□□□□ -0.112e-6■■□□□ 11.9
U2AF1Q01081 EPB41L2-218ENST00000527659 2436 ntTSL 5 BASIC13.62□□□□□ -0.232e-6■■□□□ 11.9
U2AF1Q01081 EPB41L2-215ENST00000527017 727 ntTSL 512.52□□□□□ -0.412e-6■■□□□ 11.9
U2AF1Q01081 EPB41L2-221ENST00000529208 3023 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.572e-6■■□□□ 11.9
U2AF1Q01081 EPB41L2-228ENST00000531410 2926 ntTSL 5 BASIC9.18□□□□□ -0.942e-6■■□□□ 11.9
U2AF1Q01081 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC8.9□□□□□ -0.982e-6■■□□□ 11.9
U2AF1Q01081 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.242e-6■■□□□ 11.9
U2AF1Q01081 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC6.98□□□□□ -1.292e-6■■□□□ 11.9
U2AF1Q01081 SNHG14-217ENST00000552781 552 ntTSL 1 (best) BASIC9.54□□□□□ -0.881e-12■■□□□ 11.9
U2AF1Q01081 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC37.74■■■■□ 3.632e-6■■□□□ 11.9
U2AF1Q01081 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC28.07■■■□□ 2.082e-6■■□□□ 11.9
U2AF1Q01081 LINC01089-201ENST00000428029 1024 ntTSL 225.51■■□□□ 1.672e-6■■□□□ 11.9
U2AF1Q01081 RHOF-206ENST00000545544 826 ntTSL 522.23■■□□□ 1.152e-6■■□□□ 11.9
U2AF1Q01081 RHOF-205ENST00000541657 1626 ntTSL 522.12■■□□□ 1.132e-6■■□□□ 11.9
U2AF1Q01081 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC20.66■□□□□ 0.92e-6■■□□□ 11.9
U2AF1Q01081 LINC01089-208ENST00000541694 875 ntTSL 220.04■□□□□ 0.82e-6■■□□□ 11.9
U2AF1Q01081 LINC01089-205ENST00000536662 560 ntTSL 4 BASIC16.93■□□□□ 0.32e-6■■□□□ 11.9
U2AF1Q01081 LINC01089-204ENST00000535643 1014 ntTSL 1 (best)14.7□□□□□ -0.062e-6■■□□□ 11.9
U2AF1Q01081 LINC01089-212ENST00000545885 559 ntTSL 212.23□□□□□ -0.452e-6■■□□□ 11.9
U2AF1Q01081 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.732e-9■■□□□ 11.9
U2AF1Q01081 PABPC1L-216ENST00000490798 1384 ntTSL 325.77■■□□□ 1.722e-9■■□□□ 11.9
U2AF1Q01081 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC23.16■■□□□ 1.32e-9■■□□□ 11.9
U2AF1Q01081 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.222e-9■■□□□ 11.9
U2AF1Q01081 PABPC1L-211ENST00000476056 1214 ntTSL 515.79■□□□□ 0.122e-9■■□□□ 11.9
U2AF1Q01081 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.95□□□□□ -1.783e-7■■□□□ 11.9
U2AF1Q01081 HERC1-214ENST00000561400 2215 ntTSL 215.47■□□□□ 0.072e-11■■□□□ 11.9
U2AF1Q01081 ATP6V1B2-202ENST00000519667 670 ntTSL 1 (best)28.52■■■□□ 2.168e-8■■□□□ 11.8
U2AF1Q01081 ATP6V1B2-203ENST00000520830 649 ntTSL 323.52■■□□□ 1.368e-8■■□□□ 11.8
U2AF1Q01081 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.868e-8■■□□□ 11.8
U2AF1Q01081 ATP6V1B2-205ENST00000523478 572 ntTSL 419.39■□□□□ 0.698e-8■■□□□ 11.8
U2AF1Q01081 ATP6V1B2-206ENST00000523482 6907 ntTSL 27.91□□□□□ -1.148e-8■■□□□ 11.8
U2AF1Q01081 TRIP12-203ENST00000389044 6405 ntTSL 1 (best) BASIC13.88□□□□□ -0.193e-7■■□□□ 11.8
U2AF1Q01081 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC8.66□□□□□ -1.023e-7■■□□□ 11.8
U2AF1Q01081 TRIP12-216ENST00000487178 977 ntTSL 27.78□□□□□ -1.163e-7■■□□□ 11.8
U2AF1Q01081 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC7.74□□□□□ -1.173e-7■■□□□ 11.8
U2AF1Q01081 MALAT1-208ENST00000616527 572 ntTSL 3 BASIC10.25□□□□□ -0.771e-323■■□□□ 11.8
U2AF1Q01081 MALAT1-216ENST00000620465 333 ntTSL 24.61□□□□□ -1.671e-323■■□□□ 11.8
U2AF1Q01081 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC24.36■■□□□ 1.492e-9■■□□□ 11.8
U2AF1Q01081 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC23.46■■□□□ 1.352e-9■■□□□ 11.8
U2AF1Q01081 AK2-207ENST00000482191 599 ntTSL 217.71■□□□□ 0.432e-9■■□□□ 11.8
U2AF1Q01081 AK2-209ENST00000491241 596 ntTSL 315.05■□□□□ -02e-9■■□□□ 11.8
U2AF1Q01081 AK2-202ENST00000373449 3586 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.192e-9■■□□□ 11.8
U2AF1Q01081 AK2-215ENST00000629371 3576 ntTSL 3 BASIC11.97□□□□□ -0.492e-9■■□□□ 11.8
U2AF1Q01081 REXO2-208ENST00000539754 791 ntTSL 2 BASIC26.92■■□□□ 1.92e-6■■□□□ 11.8
U2AF1Q01081 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.92e-6■■□□□ 11.8
U2AF1Q01081 REXO2-207ENST00000539333 651 ntTSL 226.08■■□□□ 1.772e-6■■□□□ 11.8
U2AF1Q01081 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.482e-6■■□□□ 11.8
U2AF1Q01081 REXO2-213ENST00000543131 539 ntTSL 324.19■■□□□ 1.462e-6■■□□□ 11.8
U2AF1Q01081 REXO2-211ENST00000541703 475 ntTSL 324.19■■□□□ 1.462e-6■■□□□ 11.8
U2AF1Q01081 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.452e-6■■□□□ 11.8
U2AF1Q01081 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC23.57■■□□□ 1.362e-6■■□□□ 11.8
U2AF1Q01081 REXO2-202ENST00000538198 449 ntTSL 323.56■■□□□ 1.362e-6■■□□□ 11.8
U2AF1Q01081 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.062e-6■■□□□ 11.8
U2AF1Q01081 REXO2-205ENST00000539119 664 ntTSL 320.72■□□□□ 0.912e-6■■□□□ 11.8
U2AF1Q01081 MRPL20-204ENST00000487659 1693 ntTSL 220.19■□□□□ 0.822e-6■■□□□ 11.8
U2AF1Q01081 POLG2-210ENST00000585141 1731 ntTSL 1 (best)19.32■□□□□ 0.682e-6■■□□□ 11.8
U2AF1Q01081 REXO2-204ENST00000538791 1081 ntTSL 214.73□□□□□ -0.052e-6■■□□□ 11.8
U2AF1Q01081 MRPL20-205ENST00000492508 588 ntTSL 214.5□□□□□ -0.092e-6■■□□□ 11.8
U2AF1Q01081 TFPI-207ENST00000421427 804 ntTSL 313.17□□□□□ -0.32e-6■■□□□ 11.8
U2AF1Q01081 UBR4-216ENST00000494503 598 ntTSL 312.88□□□□□ -0.352e-6■■□□□ 11.8
U2AF1Q01081 MRPL20-206ENST00000493287 504 ntTSL 29.6□□□□□ -0.872e-6■■□□□ 11.8
U2AF1Q01081 TFPI-211ENST00000481132 7690 ntTSL 28.61□□□□□ -1.032e-6■■□□□ 11.8
U2AF1Q01081 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC7.29□□□□□ -1.242e-6■■□□□ 11.8
U2AF1Q01081 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC6.39□□□□□ -1.392e-6■■□□□ 11.8
U2AF1Q01081 TFPI-210ENST00000453013 733 ntTSL 26.26□□□□□ -1.412e-6■■□□□ 11.8
U2AF1Q01081 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.422e-6■■□□□ 11.8
U2AF1Q01081 TFPI-209ENST00000437725 545 ntTSL 46.17□□□□□ -1.422e-6■■□□□ 11.8
U2AF1Q01081 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.492e-6■■□□□ 11.8
Retrieved 100 of 10,096 protein–RNA pairs in 50.1 ms