Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.46■□□□□ 0.55
RNF4P78317 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.46■□□□□ 0.55
RNF4P78317 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RNF4P78317 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.46■□□□□ 0.55
RNF4P78317 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RNF4P78317 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.46■□□□□ 0.55
RNF4P78317 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
RNF4P78317 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.46■□□□□ 0.55
RNF4P78317 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.46■□□□□ 0.55
RNF4P78317 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RNF4P78317 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RNF4P78317 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RNF4P78317 AL157384.1-201ENST00000445995 2473 ntBASIC18.46■□□□□ 0.55
RNF4P78317 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
RNF4P78317 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RNF4P78317 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RNF4P78317 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
RNF4P78317 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
RNF4P78317 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.54
RNF4P78317 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.54
RNF4P78317 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
RNF4P78317 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RNF4P78317 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
RNF4P78317 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.45■□□□□ 0.54
RNF4P78317 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RNF4P78317 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RNF4P78317 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
RNF4P78317 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.45■□□□□ 0.54
RNF4P78317 RN7SL471P-201ENST00000580476 299 ntBASIC18.45■□□□□ 0.54
RNF4P78317 LINC01006-201ENST00000333319 2292 ntBASIC18.45■□□□□ 0.54
RNF4P78317 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RNF4P78317 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.45■□□□□ 0.54
RNF4P78317 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RNF4P78317 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RNF4P78317 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
RNF4P78317 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.45■□□□□ 0.54
RNF4P78317 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RNF4P78317 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.45■□□□□ 0.54
RNF4P78317 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RNF4P78317 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RNF4P78317 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.45■□□□□ 0.54
RNF4P78317 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.44■□□□□ 0.54
RNF4P78317 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF4P78317 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.44■□□□□ 0.54
RNF4P78317 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF4P78317 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF4P78317 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF4P78317 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
RNF4P78317 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF4P78317 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF4P78317 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
RNF4P78317 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF4P78317 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.44■□□□□ 0.54
RNF4P78317 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF4P78317 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.44■□□□□ 0.54
RNF4P78317 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF4P78317 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.44■□□□□ 0.54
RNF4P78317 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF4P78317 AC098590.1-201ENST00000468126 897 ntBASIC18.44■□□□□ 0.54
RNF4P78317 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF4P78317 MTDHP1-201ENST00000605323 784 ntBASIC18.44■□□□□ 0.54
RNF4P78317 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF4P78317 AL162377.1-201ENST00000618844 1793 ntBASIC18.44■□□□□ 0.54
RNF4P78317 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF4P78317 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
RNF4P78317 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF4P78317 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
RNF4P78317 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.44■□□□□ 0.54
RNF4P78317 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF4P78317 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF4P78317 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF4P78317 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
RNF4P78317 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF4P78317 BX119927.1-201ENST00000636596 1552 ntBASIC18.43■□□□□ 0.54
RNF4P78317 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF4P78317 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF4P78317 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF4P78317 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
RNF4P78317 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.43■□□□□ 0.54
RNF4P78317 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
RNF4P78317 AL121829.2-201ENST00000620908 328 ntBASIC18.43■□□□□ 0.54
RNF4P78317 SLC25A24-204ENST00000569674 2357 ntBASIC18.43■□□□□ 0.54
RNF4P78317 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF4P78317 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.43■□□□□ 0.54
RNF4P78317 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.43■□□□□ 0.54
RNF4P78317 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.43■□□□□ 0.54
RNF4P78317 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF4P78317 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
RNF4P78317 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.42■□□□□ 0.54
RNF4P78317 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF4P78317 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF4P78317 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
RNF4P78317 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF4P78317 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
RNF4P78317 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.42■□□□□ 0.54
RNF4P78317 C1QBPP2-201ENST00000528754 825 ntBASIC18.42■□□□□ 0.54
RNF4P78317 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.42■□□□□ 0.54
RNF4P78317 AC142381.4-202ENST00000563973 229 ntBASIC18.42■□□□□ 0.54
RNF4P78317 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF4P78317 AL121906.2-201ENST00000621597 723 ntBASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms