Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
FOXA3P55318 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC14.94□□□□□ -0.02
FOXA3P55318 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA3P55318 AL138781.2-201ENST00000617896 1843 ntBASIC14.94□□□□□ -0.02
FOXA3P55318 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA3P55318 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA3P55318 CD37-204ENST00000535669 1674 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA3P55318 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
FOXA3P55318 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA3P55318 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA3P55318 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA3P55318 CREM-229ENST00000474362 1030 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA3P55318 AC053503.5-201ENST00000601508 636 ntBASIC14.94□□□□□ -0.02
FOXA3P55318 AL356740.2-201ENST00000601559 647 ntBASIC14.94□□□□□ -0.02
FOXA3P55318 AC011298.3-201ENST00000615796 283 ntBASIC14.94□□□□□ -0.02
FOXA3P55318 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
FOXA3P55318 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA3P55318 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA3P55318 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA3P55318 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA3P55318 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA3P55318 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA3P55318 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA3P55318 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA3P55318 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA3P55318 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA3P55318 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC14.94□□□□□ -0.02
FOXA3P55318 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA3P55318 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA3P55318 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
FOXA3P55318 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
FOXA3P55318 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC14.93□□□□□ -0.02
FOXA3P55318 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC14.93□□□□□ -0.02
FOXA3P55318 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 SNX3-202ENST00000349379 890 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 DUX4L19-201ENST00000557448 1267 ntBASIC14.93□□□□□ -0.02
FOXA3P55318 EEF1DP3-203ENST00000566025 782 ntBASIC14.93□□□□□ -0.02
FOXA3P55318 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC14.93□□□□□ -0.02
FOXA3P55318 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC14.93□□□□□ -0.02
FOXA3P55318 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC14.93□□□□□ -0.02
FOXA3P55318 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
FOXA3P55318 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
FOXA3P55318 PTGES2-AS1-201ENST00000443493 2100 ntBASIC14.93□□□□□ -0.02
FOXA3P55318 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 BX119927.1-201ENST00000636596 1552 ntBASIC14.93□□□□□ -0.02
FOXA3P55318 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 AC005224.4-201ENST00000583262 1652 ntBASIC14.93□□□□□ -0.02
FOXA3P55318 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
FOXA3P55318 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
FOXA3P55318 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
FOXA3P55318 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
FOXA3P55318 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 SERBP1P1-201ENST00000396021 1160 ntBASIC14.92□□□□□ -0.02
FOXA3P55318 AC009299.2-201ENST00000482477 511 ntBASIC14.92□□□□□ -0.02
FOXA3P55318 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
FOXA3P55318 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC14.92□□□□□ -0.02
FOXA3P55318 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC14.92□□□□□ -0.02
FOXA3P55318 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC14.92□□□□□ -0.02
FOXA3P55318 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
FOXA3P55318 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
FOXA3P55318 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms