Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIG3P49916 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.85■□□□□ 0.93
LIG3P49916 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
LIG3P49916 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIG3P49916 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIG3P49916 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIG3P49916 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIG3P49916 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LIG3P49916 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIG3P49916 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LIG3P49916 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIG3P49916 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LIG3P49916 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.84■□□□□ 0.93
LIG3P49916 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.84■□□□□ 0.93
LIG3P49916 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIG3P49916 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
LIG3P49916 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
LIG3P49916 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIG3P49916 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.84■□□□□ 0.93
LIG3P49916 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIG3P49916 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIG3P49916 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.84■□□□□ 0.93
LIG3P49916 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIG3P49916 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
LIG3P49916 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.84■□□□□ 0.93
LIG3P49916 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.84■□□□□ 0.93
LIG3P49916 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LIG3P49916 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
LIG3P49916 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LIG3P49916 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIG3P49916 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIG3P49916 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
LIG3P49916 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.83■□□□□ 0.93
LIG3P49916 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIG3P49916 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.83■□□□□ 0.93
LIG3P49916 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.83■□□□□ 0.93
LIG3P49916 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.83■□□□□ 0.93
LIG3P49916 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.83■□□□□ 0.93
LIG3P49916 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIG3P49916 AC133552.2-202ENST00000575694 574 ntBASIC20.83■□□□□ 0.93
LIG3P49916 AL591742.1-201ENST00000604433 565 ntBASIC20.83■□□□□ 0.93
LIG3P49916 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.83■□□□□ 0.93
LIG3P49916 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
LIG3P49916 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
LIG3P49916 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIG3P49916 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIG3P49916 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.83■□□□□ 0.92
LIG3P49916 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.92
LIG3P49916 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.83■□□□□ 0.92
LIG3P49916 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIG3P49916 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIG3P49916 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIG3P49916 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIG3P49916 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIG3P49916 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
LIG3P49916 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIG3P49916 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIG3P49916 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIG3P49916 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.82■□□□□ 0.92
LIG3P49916 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIG3P49916 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIG3P49916 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
LIG3P49916 AF201337.1-201ENST00000520239 748 ntBASIC20.82■□□□□ 0.92
LIG3P49916 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.82■□□□□ 0.92
LIG3P49916 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.82■□□□□ 0.92
LIG3P49916 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIG3P49916 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIG3P49916 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIG3P49916 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIG3P49916 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.82■□□□□ 0.92
LIG3P49916 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIG3P49916 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIG3P49916 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.82■□□□□ 0.92
LIG3P49916 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIG3P49916 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.82■□□□□ 0.92
LIG3P49916 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIG3P49916 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.81■□□□□ 0.92
LIG3P49916 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.81■□□□□ 0.92
LIG3P49916 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LIG3P49916 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIG3P49916 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LIG3P49916 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIG3P49916 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIG3P49916 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.81■□□□□ 0.92
LIG3P49916 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.81■□□□□ 0.92
LIG3P49916 AC105036.2-201ENST00000569468 176 ntBASIC20.81■□□□□ 0.92
LIG3P49916 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.81■□□□□ 0.92
LIG3P49916 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LIG3P49916 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
LIG3P49916 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIG3P49916 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIG3P49916 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.81■□□□□ 0.92
LIG3P49916 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIG3P49916 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.81■□□□□ 0.92
LIG3P49916 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.8■□□□□ 0.92
LIG3P49916 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
LIG3P49916 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIG3P49916 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIG3P49916 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.8■□□□□ 0.92
LIG3P49916 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms