Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.95■□□□□ 0.78
PTPN4P29074 TERF1P5-201ENST00000477545 1207 ntBASIC19.95■□□□□ 0.78
PTPN4P29074 AC105036.2-201ENST00000569468 176 ntBASIC19.95■□□□□ 0.78
PTPN4P29074 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN4P29074 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN4P29074 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.95■□□□□ 0.78
PTPN4P29074 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
PTPN4P29074 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN4P29074 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN4P29074 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN4P29074 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.95■□□□□ 0.78
PTPN4P29074 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PTPN4P29074 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.95■□□□□ 0.78
PTPN4P29074 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN4P29074 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN4P29074 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
PTPN4P29074 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN4P29074 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN4P29074 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN4P29074 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN4P29074 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN4P29074 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.94■□□□□ 0.78
PTPN4P29074 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.94■□□□□ 0.78
PTPN4P29074 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.94■□□□□ 0.78
PTPN4P29074 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.94■□□□□ 0.78
PTPN4P29074 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.94■□□□□ 0.78
PTPN4P29074 AL138781.1-201ENST00000566567 1274 ntBASIC19.94■□□□□ 0.78
PTPN4P29074 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.94■□□□□ 0.78
PTPN4P29074 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.94■□□□□ 0.78
PTPN4P29074 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.94■□□□□ 0.78
PTPN4P29074 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.94■□□□□ 0.78
PTPN4P29074 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
PTPN4P29074 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN4P29074 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.94■□□□□ 0.78
PTPN4P29074 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN4P29074 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
PTPN4P29074 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PTPN4P29074 AC026471.1-201ENST00000564629 3026 ntBASIC19.94■□□□□ 0.78
PTPN4P29074 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN4P29074 AC005332.7-201ENST00000614046 2005 ntBASIC19.93■□□□□ 0.78
PTPN4P29074 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.93■□□□□ 0.78
PTPN4P29074 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN4P29074 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN4P29074 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN4P29074 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.93■□□□□ 0.78
PTPN4P29074 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN4P29074 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN4P29074 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.93■□□□□ 0.78
PTPN4P29074 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN4P29074 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN4P29074 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN4P29074 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN4P29074 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
PTPN4P29074 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN4P29074 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN4P29074 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN4P29074 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN4P29074 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
PTPN4P29074 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN4P29074 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN4P29074 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN4P29074 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN4P29074 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN4P29074 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN4P29074 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN4P29074 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN4P29074 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
PTPN4P29074 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.92■□□□□ 0.78
PTPN4P29074 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
PTPN4P29074 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
PTPN4P29074 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN4P29074 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
PTPN4P29074 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN4P29074 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN4P29074 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN4P29074 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN4P29074 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN4P29074 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.91■□□□□ 0.78
PTPN4P29074 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 KRT18P6-201ENST00000555540 1265 ntBASIC19.91■□□□□ 0.78
PTPN4P29074 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
PTPN4P29074 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 AC120498.10-201ENST00000621827 505 ntBASIC19.91■□□□□ 0.78
PTPN4P29074 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
PTPN4P29074 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.91■□□□□ 0.78
PTPN4P29074 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN4P29074 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms