Protein–RNA interactions for Protein: P20436

RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3, yeastyeast

Predictions only

Length 146 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPB8P20436 YCR095W-AYCR095W-A 159 nt0.57□□□□□ -2.32
RPB8P20436 SOM1YEL059C-A 225 nt0.57□□□□□ -2.32
RPB8P20436 YMR160WYMR160W 2451 nt0.56□□□□□ -2.32
RPB8P20436 YBL100W-BYBL100W-B 5313 nt0.54□□□□□ -2.32
RPB8P20436 YNL205CYNL205C 423 nt0.54□□□□□ -2.32
RPB8P20436 SBH1YER087C-B 249 nt0.53□□□□□ -2.32
RPB8P20436 BIR1YJR089W 2865 nt0.52□□□□□ -2.33
RPB8P20436 RCO1YMR075W 2055 nt0.52□□□□□ -2.33
RPB8P20436 IQG1YPL242C 4488 nt0.52□□□□□ -2.33
RPB8P20436 tF(GAA)BtF(GAA)B 73 nt0.52□□□□□ -2.33
RPB8P20436 tF(GAA)FtF(GAA)F 73 nt0.52□□□□□ -2.33
RPB8P20436 tF(GAA)GtF(GAA)G 73 nt0.52□□□□□ -2.33
RPB8P20436 tF(GAA)H1tF(GAA)H1 73 nt0.52□□□□□ -2.33
RPB8P20436 tF(GAA)H2tF(GAA)H2 73 nt0.52□□□□□ -2.33
RPB8P20436 tF(GAA)MtF(GAA)M 73 nt0.52□□□□□ -2.33
RPB8P20436 tF(GAA)P1tF(GAA)P1 73 nt0.52□□□□□ -2.33
RPB8P20436 tF(GAA)P2tF(GAA)P2 73 nt0.52□□□□□ -2.33
RPB8P20436 CSE1YGL238W 2883 nt0.51□□□□□ -2.33
RPB8P20436 UTP20YBL004W 7482 nt0.51□□□□□ -2.33
RPB8P20436 UTP10YJL109C 5310 nt0.51□□□□□ -2.33
RPB8P20436 MLP1YKR095W 5628 nt0.5□□□□□ -2.33
RPB8P20436 YNL054W-BYNL054W-B 5250 nt0.5□□□□□ -2.33
RPB8P20436 YBR099CYBR099C 384 nt0.48□□□□□ -2.33
RPB8P20436 PMP2YEL017C-A 132 nt0.46□□□□□ -2.34
RPB8P20436 YKL145W-AYKL145W-A 93 nt0.45□□□□□ -2.34
RPB8P20436 YNL266WYNL266W 420 nt0.45□□□□□ -2.34
RPB8P20436 ESP1YGR098C 4893 nt0.45□□□□□ -2.34
RPB8P20436 EST1YLR233C 2100 nt0.44□□□□□ -2.34
RPB8P20436 snR69snR69 101 nt0.43□□□□□ -2.34
RPB8P20436 SEC10YLR166C 2616 nt0.42□□□□□ -2.34
RPB8P20436 YOL014WYOL014W 375 nt0.4□□□□□ -2.35
RPB8P20436 MLP2YIL149C 5040 nt0.4□□□□□ -2.35
RPB8P20436 YBR178WYBR178W 375 nt0.39□□□□□ -2.35
RPB8P20436 YJL077W-AYJL077W-A 87 nt0.38□□□□□ -2.35
RPB8P20436 FMP27YLR454W 7887 nt0.36□□□□□ -2.35
RPB8P20436 tD(GUC)QtD(GUC)Q 75 nt0.35□□□□□ -2.35
RPB8P20436 Q0143Q0143 153 nt0.35□□□□□ -2.35
RPB8P20436 YOR186C-AYOR186C-A 210 nt0.35□□□□□ -2.35
RPB8P20436 RDS3YPR094W 324 nt0.34□□□□□ -2.36
RPB8P20436 YBR196C-AYBR196C-A 150 nt0.34□□□□□ -2.36
RPB8P20436 SOV1YMR066W 2697 nt0.32□□□□□ -2.36
RPB8P20436 AI1Q0050 2505 nt0.31□□□□□ -2.36
RPB8P20436 YNL103W-AYNL103W-A 90 nt0.28□□□□□ -2.36
RPB8P20436 YOL013W-AYOL013W-A 192 nt0.27□□□□□ -2.37
RPB8P20436 tQ(UUG)QtQ(UUG)Q 76 nt0.26□□□□□ -2.37
RPB8P20436 YLR286W-AYLR286W-A 135 nt0.26□□□□□ -2.37
RPB8P20436 snR61snR61 90 nt0.23□□□□□ -2.37
RPB8P20436 YDL159C-BYDL159C-B 177 nt0.23□□□□□ -2.37
RPB8P20436 snR85snR85 171 nt0.22□□□□□ -2.37
RPB8P20436 YER090C-AYER090C-A 90 nt0.21□□□□□ -2.38
RPB8P20436 THO2YNL139C 4794 nt0.18□□□□□ -2.38
RPB8P20436 snR81snR81 201 nt0.18□□□□□ -2.38
RPB8P20436 YLR299C-AYLR299C-A 93 nt0.18□□□□□ -2.38
RPB8P20436 snR50snR50 90 nt0.18□□□□□ -2.38
RPB8P20436 YAL037C-AYAL037C-A 93 nt0.17□□□□□ -2.38
RPB8P20436 YGL041C-BYGL041C-B 183 nt0.15□□□□□ -2.39
RPB8P20436 TFB5YDR079C-A 219 nt0.14□□□□□ -2.39
RPB8P20436 YBL071C-BYBL071C-B 99 nt0.14□□□□□ -2.39
RPB8P20436 YOL083C-AYOL083C-A 141 nt0.14□□□□□ -2.39
RPB8P20436 YER078W-AYER078W-A 165 nt0.12□□□□□ -2.39
RPB8P20436 YML100W-AYML100W-A 174 nt0.09□□□□□ -2.4
RPB8P20436 snR128snR128 126 nt0.08□□□□□ -2.4
RPB8P20436 YML054C-AYML054C-A 159 nt0.04□□□□□ -2.4
RPB8P20436 YOL164W-AYOL164W-A 183 nt0.03□□□□□ -2.4
RPB8P20436 YMR326CYMR326C 309 nt0.01□□□□□ -2.41
RPB8P20436 YBL109WYBL109W 336 nt0.01□□□□□ -2.41
RPB8P20436 snR67snR67 82 nt0□□□□□ -2.41
RPB8P20436 YHR217CYHR217C 462 nt-0.02□□□□□ -2.41
RPB8P20436 YHR180C-BYHR180C-B 105 nt-0.04□□□□□ -2.42
RPB8P20436 snR45snR45 172 nt-0.04□□□□□ -2.42
RPB8P20436 tS(GCU)Q1tS(GCU)Q1 86 nt-0.05□□□□□ -2.42
RPB8P20436 YGR240C-AYGR240C-A 201 nt-0.06□□□□□ -2.42
RPB8P20436 YBL100W-CYBL100W-C 120 nt-0.09□□□□□ -2.42
RPB8P20436 SKI7YOR076C 2244 nt-0.11□□□□□ -2.43
RPB8P20436 YBR109W-AYBR109W-A 225 nt-0.11□□□□□ -2.43
RPB8P20436 snR47snR47 99 nt-0.11□□□□□ -2.43
RPB8P20436 YDR524C-AYDR524C-A 120 nt-0.12□□□□□ -2.43
RPB8P20436 snR62snR62 100 nt-0.14□□□□□ -2.43
RPB8P20436 RPL41AYDL184C 78 nt-0.18□□□□□ -2.44
RPB8P20436 YBR296C-AYBR296C-A 120 nt-0.18□□□□□ -2.44
RPB8P20436 snR38snR38 95 nt-0.19□□□□□ -2.44
RPB8P20436 tA(UGC)QtA(UGC)Q 76 nt-0.2□□□□□ -2.44
RPB8P20436 PAU9YBL108C-A 129 nt-0.21□□□□□ -2.44
RPB8P20436 YDR034C-AYDR034C-A 177 nt-0.23□□□□□ -2.45
RPB8P20436 SBH2YER019C-A 267 nt-0.23□□□□□ -2.45
RPB8P20436 YJL113WYJL113W 4647 nt-0.31□□□□□ -2.46
RPB8P20436 YKL225WYKL225W 348 nt-0.33□□□□□ -2.46
RPB8P20436 YLL066W-BYLL066W-B 171 nt-0.34□□□□□ -2.46
RPB8P20436 YDL247W-AYDL247W-A 75 nt-0.35□□□□□ -2.47
RPB8P20436 YKL106C-AYKL106C-A 120 nt-0.43□□□□□ -2.48
RPB8P20436 YOR376W-AYOR376W-A 156 nt-0.43□□□□□ -2.48
RPB8P20436 snR64snR64 101 nt-0.48□□□□□ -2.49
RPB8P20436 YHL009W-BYHL009W-B 5409 nt-0.51□□□□□ -2.49
RPB8P20436 snR161snR161 161 nt-0.51□□□□□ -2.49
RPB8P20436 URB1YKL014C 5295 nt-0.52□□□□□ -2.49
RPB8P20436 YOR316C-AYOR316C-A 210 nt-0.55□□□□□ -2.5
RPB8P20436 YDL159W-AYDL159W-A 132 nt-0.62□□□□□ -2.51
RPB8P20436 snR53snR53 91 nt-0.67□□□□□ -2.52
RPB8P20436 YGR122C-AYGR122C-A 129 nt-0.69□□□□□ -2.52
RPB8P20436 snR33snR33 183 nt-0.73□□□□□ -2.53
Retrieved 100 of 7,029 protein–RNA pairs in 13.5 ms