Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.78■□□□□ 0.92
HMGA1P17096 CD177P1-201ENST00000606252 935 ntBASIC20.78■□□□□ 0.92
HMGA1P17096 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HMGA1P17096 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGA1P17096 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
HMGA1P17096 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGA1P17096 KRT16P6-202ENST00000425692 1426 ntBASIC20.78■□□□□ 0.92
HMGA1P17096 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.77■□□□□ 0.92
HMGA1P17096 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGA1P17096 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HMGA1P17096 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.77■□□□□ 0.92
HMGA1P17096 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
HMGA1P17096 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HMGA1P17096 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.77■□□□□ 0.92
HMGA1P17096 AC211429.1-201ENST00000415277 523 ntBASIC20.77■□□□□ 0.92
HMGA1P17096 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.77■□□□□ 0.92
HMGA1P17096 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGA1P17096 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.77■□□□□ 0.92
HMGA1P17096 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.77■□□□□ 0.92
HMGA1P17096 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGA1P17096 AL353708.3-201ENST00000610272 989 ntBASIC20.77■□□□□ 0.92
HMGA1P17096 AC026471.5-201ENST00000615068 467 ntBASIC20.77■□□□□ 0.92
HMGA1P17096 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGA1P17096 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
HMGA1P17096 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGA1P17096 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGA1P17096 TFP1-202ENST00000475455 1573 ntBASIC20.76■□□□□ 0.91
HMGA1P17096 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGA1P17096 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGA1P17096 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGA1P17096 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.76■□□□□ 0.91
HMGA1P17096 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.76■□□□□ 0.91
HMGA1P17096 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.76■□□□□ 0.91
HMGA1P17096 FAM197Y1-201ENST00000421178 764 ntBASIC20.76■□□□□ 0.91
HMGA1P17096 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.76■□□□□ 0.91
HMGA1P17096 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
HMGA1P17096 AC073195.1-201ENST00000607241 877 ntBASIC20.76■□□□□ 0.91
HMGA1P17096 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGA1P17096 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGA1P17096 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
HMGA1P17096 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.75■□□□□ 0.91
HMGA1P17096 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGA1P17096 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.75■□□□□ 0.91
HMGA1P17096 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGA1P17096 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGA1P17096 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
HMGA1P17096 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGA1P17096 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGA1P17096 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGA1P17096 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
HMGA1P17096 ECEL1P3-201ENST00000427961 737 ntBASIC20.75■□□□□ 0.91
HMGA1P17096 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGA1P17096 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
HMGA1P17096 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGA1P17096 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGA1P17096 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGA1P17096 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.75■□□□□ 0.91
HMGA1P17096 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGA1P17096 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGA1P17096 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.75■□□□□ 0.91
HMGA1P17096 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.75■□□□□ 0.91
HMGA1P17096 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGA1P17096 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGA1P17096 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGA1P17096 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
HMGA1P17096 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.75■□□□□ 0.91
HMGA1P17096 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.75■□□□□ 0.91
HMGA1P17096 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
HMGA1P17096 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGA1P17096 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGA1P17096 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
HMGA1P17096 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGA1P17096 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.74■□□□□ 0.91
HMGA1P17096 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGA1P17096 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGA1P17096 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGA1P17096 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGA1P17096 AP003071.4-201ENST00000562276 1284 ntBASIC20.74■□□□□ 0.91
HMGA1P17096 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
HMGA1P17096 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
HMGA1P17096 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGA1P17096 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGA1P17096 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
HMGA1P17096 AC018553.1-201ENST00000616682 1458 ntBASIC20.74■□□□□ 0.91
HMGA1P17096 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGA1P17096 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGA1P17096 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGA1P17096 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGA1P17096 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGA1P17096 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.73■□□□□ 0.91
HMGA1P17096 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
HMGA1P17096 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
HMGA1P17096 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGA1P17096 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HMGA1P17096 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
HMGA1P17096 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGA1P17096 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGA1P17096 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HMGA1P17096 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.73■□□□□ 0.91
HMGA1P17096 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms