Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC4P09017 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC4P09017 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC4P09017 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC4P09017 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC4P09017 AP006587.1-201ENST00000534129 1502 ntBASIC19.52■□□□□ 0.72
HOXC4P09017 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC4P09017 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC4P09017 PHGDH-210ENST00000641115 1638 ntBASIC19.52■□□□□ 0.72
HOXC4P09017 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC4P09017 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
HOXC4P09017 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.52■□□□□ 0.72
HOXC4P09017 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.52■□□□□ 0.72
HOXC4P09017 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.52■□□□□ 0.72
HOXC4P09017 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC4P09017 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC4P09017 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC4P09017 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HOXC4P09017 BX119927.1-201ENST00000636596 1552 ntBASIC19.52■□□□□ 0.71
HOXC4P09017 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
HOXC4P09017 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
HOXC4P09017 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
HOXC4P09017 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.52■□□□□ 0.71
HOXC4P09017 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HOXC4P09017 SMG8-203ENST00000578922 2178 ntBASIC19.51■□□□□ 0.71
HOXC4P09017 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC4P09017 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC4P09017 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC4P09017 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
HOXC4P09017 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.51■□□□□ 0.71
HOXC4P09017 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC4P09017 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC4P09017 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.51■□□□□ 0.71
HOXC4P09017 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.51■□□□□ 0.71
HOXC4P09017 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
HOXC4P09017 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.51■□□□□ 0.71
HOXC4P09017 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.51■□□□□ 0.71
HOXC4P09017 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
HOXC4P09017 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC4P09017 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC4P09017 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC4P09017 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC4P09017 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
HOXC4P09017 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC4P09017 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC4P09017 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
HOXC4P09017 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC4P09017 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC4P09017 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC4P09017 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.5■□□□□ 0.71
HOXC4P09017 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.5■□□□□ 0.71
HOXC4P09017 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC4P09017 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC4P09017 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.5■□□□□ 0.71
HOXC4P09017 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.5■□□□□ 0.71
HOXC4P09017 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.5■□□□□ 0.71
HOXC4P09017 MIR4785-201ENST00000585005 73 ntBASIC19.5■□□□□ 0.71
HOXC4P09017 AC073195.1-201ENST00000607241 877 ntBASIC19.5■□□□□ 0.71
HOXC4P09017 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC4P09017 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HOXC4P09017 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.5■□□□□ 0.71
HOXC4P09017 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.5■□□□□ 0.71
HOXC4P09017 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.5■□□□□ 0.71
HOXC4P09017 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC4P09017 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
HOXC4P09017 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC4P09017 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC4P09017 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.49■□□□□ 0.71
HOXC4P09017 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC4P09017 YBX1P10-201ENST00000444752 975 ntBASIC19.49■□□□□ 0.71
HOXC4P09017 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
HOXC4P09017 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.49■□□□□ 0.71
HOXC4P09017 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.49■□□□□ 0.71
HOXC4P09017 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC4P09017 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC4P09017 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC4P09017 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC4P09017 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC4P09017 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.49■□□□□ 0.71
HOXC4P09017 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC4P09017 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HOXC4P09017 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
HOXC4P09017 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC4P09017 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC4P09017 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
HOXC4P09017 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC4P09017 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC4P09017 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC4P09017 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC4P09017 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC4P09017 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC4P09017 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC4P09017 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.48■□□□□ 0.71
HOXC4P09017 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.48■□□□□ 0.71
HOXC4P09017 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.48■□□□□ 0.71
HOXC4P09017 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HOXC4P09017 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.48■□□□□ 0.71
HOXC4P09017 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.48■□□□□ 0.71
HOXC4P09017 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
HOXC4P09017 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms