Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
COL1A1P02452 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
COL1A1P02452 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
COL1A1P02452 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
COL1A1P02452 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC24.14■■□□□ 1.46
COL1A1P02452 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC24.14■■□□□ 1.46
COL1A1P02452 FDX2-207ENST00000494368 584 ntTSL 4 BASIC24.14■■□□□ 1.46
COL1A1P02452 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
COL1A1P02452 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC24.14■■□□□ 1.46
COL1A1P02452 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
COL1A1P02452 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC24.14■■□□□ 1.45
COL1A1P02452 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.45
COL1A1P02452 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC24.14■■□□□ 1.45
COL1A1P02452 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC24.14■■□□□ 1.45
COL1A1P02452 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
COL1A1P02452 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
COL1A1P02452 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
COL1A1P02452 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
COL1A1P02452 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
COL1A1P02452 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC24.13■■□□□ 1.45
COL1A1P02452 AP003071.4-201ENST00000562276 1284 ntBASIC24.13■■□□□ 1.45
COL1A1P02452 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC24.13■■□□□ 1.45
COL1A1P02452 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
COL1A1P02452 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC24.13■■□□□ 1.45
COL1A1P02452 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC24.13■■□□□ 1.45
COL1A1P02452 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
COL1A1P02452 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC24.13■■□□□ 1.45
COL1A1P02452 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
COL1A1P02452 CALM3-202ENST00000391918 702 ntTSL 2 BASIC24.13■■□□□ 1.45
COL1A1P02452 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
COL1A1P02452 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
COL1A1P02452 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC24.13■■□□□ 1.45
COL1A1P02452 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
COL1A1P02452 SMG8-203ENST00000578922 2178 ntBASIC24.13■■□□□ 1.45
COL1A1P02452 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
COL1A1P02452 ME2-216ENST00000639850 2331 ntTSL 5 BASIC24.12■■□□□ 1.45
COL1A1P02452 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
COL1A1P02452 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
COL1A1P02452 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
COL1A1P02452 PALM-208ENST00000592155 2272 ntTSL 4 BASIC24.12■■□□□ 1.45
COL1A1P02452 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC24.12■■□□□ 1.45
COL1A1P02452 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC24.12■■□□□ 1.45
COL1A1P02452 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
COL1A1P02452 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
COL1A1P02452 TMPOP1-202ENST00000424642 1267 ntBASIC24.12■■□□□ 1.45
COL1A1P02452 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC24.12■■□□□ 1.45
COL1A1P02452 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC24.12■■□□□ 1.45
COL1A1P02452 RN7SL850P-201ENST00000579959 291 ntBASIC24.12■■□□□ 1.45
COL1A1P02452 RPS15-203ENST00000586096 570 ntTSL 2 BASIC24.12■■□□□ 1.45
COL1A1P02452 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC24.12■■□□□ 1.45
COL1A1P02452 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
COL1A1P02452 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
COL1A1P02452 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC24.11■■□□□ 1.45
COL1A1P02452 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
COL1A1P02452 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
COL1A1P02452 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
COL1A1P02452 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
COL1A1P02452 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC24.11■■□□□ 1.45
COL1A1P02452 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
COL1A1P02452 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
COL1A1P02452 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
COL1A1P02452 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC24.11■■□□□ 1.45
COL1A1P02452 SAPCD2P4-201ENST00000424595 1171 ntBASIC24.11■■□□□ 1.45
COL1A1P02452 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
COL1A1P02452 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
COL1A1P02452 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC24.11■■□□□ 1.45
COL1A1P02452 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC24.11■■□□□ 1.45
COL1A1P02452 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
COL1A1P02452 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
COL1A1P02452 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
COL1A1P02452 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC24.1■■□□□ 1.45
COL1A1P02452 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC24.1■■□□□ 1.45
COL1A1P02452 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
COL1A1P02452 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
COL1A1P02452 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
COL1A1P02452 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
COL1A1P02452 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC24.1■■□□□ 1.45
COL1A1P02452 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC24.1■■□□□ 1.45
COL1A1P02452 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC24.1■■□□□ 1.45
COL1A1P02452 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
COL1A1P02452 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
COL1A1P02452 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC24.1■■□□□ 1.45
COL1A1P02452 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC24.1■■□□□ 1.45
COL1A1P02452 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC24.1■■□□□ 1.45
COL1A1P02452 AL445228.2-201ENST00000605589 952 ntBASIC24.1■■□□□ 1.45
COL1A1P02452 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC24.1■■□□□ 1.45
COL1A1P02452 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
COL1A1P02452 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
COL1A1P02452 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
COL1A1P02452 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC24.09■■□□□ 1.45
COL1A1P02452 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
COL1A1P02452 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
COL1A1P02452 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
COL1A1P02452 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC24.09■■□□□ 1.45
COL1A1P02452 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
COL1A1P02452 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC24.09■■□□□ 1.45
COL1A1P02452 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
COL1A1P02452 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC24.09■■□□□ 1.45
COL1A1P02452 AC116351.2-201ENST00000606540 1585 ntBASIC24.09■■□□□ 1.45
COL1A1P02452 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms