Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
RAPGEF3O95398 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC30.13■■■□□ 2.41
RAPGEF3O95398 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC30.13■■■□□ 2.41
RAPGEF3O95398 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
RAPGEF3O95398 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
RAPGEF3O95398 HLA-G-202ENST00000376815 851 ntBASIC30.13■■■□□ 2.41
RAPGEF3O95398 HLA-G-203ENST00000376818 1127 ntBASIC30.13■■■□□ 2.41
RAPGEF3O95398 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
RAPGEF3O95398 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
RAPGEF3O95398 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC30.13■■■□□ 2.41
RAPGEF3O95398 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC30.13■■■□□ 2.41
RAPGEF3O95398 IRF5-214ENST00000613821 595 ntTSL 5 BASIC30.13■■■□□ 2.41
RAPGEF3O95398 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC30.13■■■□□ 2.41
RAPGEF3O95398 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RAPGEF3O95398 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC30.12■■■□□ 2.41
RAPGEF3O95398 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC30.12■■■□□ 2.41
RAPGEF3O95398 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC30.12■■■□□ 2.41
RAPGEF3O95398 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
RAPGEF3O95398 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
RAPGEF3O95398 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
RAPGEF3O95398 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC30.12■■■□□ 2.41
RAPGEF3O95398 AL359075.1-203ENST00000462729 1002 ntBASIC30.12■■■□□ 2.41
RAPGEF3O95398 PTK2-216ENST00000519881 863 ntTSL 3 BASIC30.12■■■□□ 2.41
RAPGEF3O95398 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC30.12■■■□□ 2.41
RAPGEF3O95398 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RAPGEF3O95398 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RAPGEF3O95398 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC30.12■■■□□ 2.41
RAPGEF3O95398 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RAPGEF3O95398 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
RAPGEF3O95398 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC30.11■■■□□ 2.41
RAPGEF3O95398 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
RAPGEF3O95398 CALM3-202ENST00000391918 702 ntTSL 2 BASIC30.11■■■□□ 2.41
RAPGEF3O95398 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC30.11■■■□□ 2.41
RAPGEF3O95398 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC30.11■■■□□ 2.41
RAPGEF3O95398 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC30.11■■■□□ 2.41
RAPGEF3O95398 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC30.11■■■□□ 2.41
RAPGEF3O95398 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC30.11■■■□□ 2.41
RAPGEF3O95398 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC30.11■■■□□ 2.41
RAPGEF3O95398 AL691432.3-201ENST00000621860 400 ntBASIC30.11■■■□□ 2.41
RAPGEF3O95398 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC30.11■■■□□ 2.41
RAPGEF3O95398 STAC-204ENST00000457375 1366 ntTSL 2 BASIC30.11■■■□□ 2.41
RAPGEF3O95398 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
RAPGEF3O95398 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC30.1■■■□□ 2.41
RAPGEF3O95398 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
RAPGEF3O95398 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC30.1■■■□□ 2.41
RAPGEF3O95398 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
RAPGEF3O95398 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
RAPGEF3O95398 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC30.1■■■□□ 2.41
RAPGEF3O95398 AP000347.1-202ENST00000435868 847 ntBASIC30.1■■■□□ 2.41
RAPGEF3O95398 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC30.1■■■□□ 2.41
RAPGEF3O95398 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC30.1■■■□□ 2.41
RAPGEF3O95398 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
RAPGEF3O95398 CYGB-204ENST00000589342 815 ntTSL 3 BASIC30.1■■■□□ 2.41
RAPGEF3O95398 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
RAPGEF3O95398 AC131212.4-201ENST00000623606 975 ntBASIC30.1■■■□□ 2.41
RAPGEF3O95398 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC30.1■■■□□ 2.41
RAPGEF3O95398 AP006587.1-201ENST00000534129 1502 ntBASIC30.1■■■□□ 2.41
RAPGEF3O95398 RCC2P6-201ENST00000526625 1557 ntBASIC30.1■■■□□ 2.41
RAPGEF3O95398 STK25-204ENST00000405585 1643 ntTSL 2 BASIC30.1■■■□□ 2.41
RAPGEF3O95398 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
RAPGEF3O95398 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
RAPGEF3O95398 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
RAPGEF3O95398 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC30.1■■■□□ 2.41
RAPGEF3O95398 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
RAPGEF3O95398 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
RAPGEF3O95398 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
RAPGEF3O95398 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
RAPGEF3O95398 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
RAPGEF3O95398 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
RAPGEF3O95398 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
RAPGEF3O95398 PVRIG2P-201ENST00000435460 978 ntBASIC30.09■■■□□ 2.41
RAPGEF3O95398 MFAP1P1-201ENST00000442257 1255 ntBASIC30.09■■■□□ 2.41
RAPGEF3O95398 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
RAPGEF3O95398 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
RAPGEF3O95398 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
RAPGEF3O95398 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
RAPGEF3O95398 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
RAPGEF3O95398 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC30.09■■■□□ 2.41
RAPGEF3O95398 AC069148.1-201ENST00000608741 768 ntBASIC30.09■■■□□ 2.41
RAPGEF3O95398 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC30.09■■■□□ 2.41
RAPGEF3O95398 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC30.08■■■□□ 2.41
RAPGEF3O95398 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC30.08■■■□□ 2.41
RAPGEF3O95398 AC092338.2-201ENST00000568827 1415 ntBASIC30.08■■■□□ 2.41
RAPGEF3O95398 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
RAPGEF3O95398 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC30.08■■■□□ 2.41
RAPGEF3O95398 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC30.08■■■□□ 2.41
RAPGEF3O95398 AC010653.2-201ENST00000623505 997 ntBASIC30.08■■■□□ 2.41
RAPGEF3O95398 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
RAPGEF3O95398 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
RAPGEF3O95398 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
RAPGEF3O95398 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC30.07■■■□□ 2.4
RAPGEF3O95398 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
RAPGEF3O95398 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC30.07■■■□□ 2.4
RAPGEF3O95398 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
RAPGEF3O95398 ANKRD20A18P-201ENST00000359341 492 ntBASIC30.07■■■□□ 2.4
RAPGEF3O95398 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC30.07■■■□□ 2.4
RAPGEF3O95398 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC30.07■■■□□ 2.4
RAPGEF3O95398 CCR12P-201ENST00000446203 998 ntBASIC30.07■■■□□ 2.4
RAPGEF3O95398 KRT18P38-201ENST00000449496 1282 ntBASIC30.07■■■□□ 2.4
RAPGEF3O95398 AL441883.1-201ENST00000566170 1045 ntBASIC30.07■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms