Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.48■□□□□ 0.71
SIX3O95343 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SIX3O95343 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SIX3O95343 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SIX3O95343 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SIX3O95343 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.48■□□□□ 0.71
SIX3O95343 AC007322.1-201ENST00000426983 750 ntBASIC19.48■□□□□ 0.71
SIX3O95343 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.48■□□□□ 0.71
SIX3O95343 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SIX3O95343 AC022517.1-201ENST00000592429 346 ntBASIC19.48■□□□□ 0.71
SIX3O95343 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SIX3O95343 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
SIX3O95343 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.48■□□□□ 0.71
SIX3O95343 AC231657.2-201ENST00000624556 255 ntBASIC19.48■□□□□ 0.71
SIX3O95343 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SIX3O95343 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.48■□□□□ 0.71
SIX3O95343 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SIX3O95343 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.47■□□□□ 0.71
SIX3O95343 TREX1-205ENST00000625293 1783 ntBASIC19.47■□□□□ 0.71
SIX3O95343 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.47■□□□□ 0.71
SIX3O95343 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SIX3O95343 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.47■□□□□ 0.71
SIX3O95343 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.47■□□□□ 0.71
SIX3O95343 AC008694.1-202ENST00000636953 945 ntBASIC19.47■□□□□ 0.71
SIX3O95343 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SIX3O95343 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SIX3O95343 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SIX3O95343 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SIX3O95343 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SIX3O95343 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.46■□□□□ 0.71
SIX3O95343 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SIX3O95343 AC004911.1-201ENST00000416316 871 ntBASIC19.46■□□□□ 0.71
SIX3O95343 AC093787.1-201ENST00000450396 207 ntBASIC19.46■□□□□ 0.71
SIX3O95343 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.46■□□□□ 0.71
SIX3O95343 AL031963.3-201ENST00000606441 850 ntBASIC19.46■□□□□ 0.71
SIX3O95343 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.46■□□□□ 0.71
SIX3O95343 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SIX3O95343 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SIX3O95343 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SIX3O95343 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SIX3O95343 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SIX3O95343 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SIX3O95343 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SIX3O95343 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SIX3O95343 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SIX3O95343 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.45■□□□□ 0.7
SIX3O95343 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SIX3O95343 AC010980.2-201ENST00000587099 1412 ntBASIC19.45■□□□□ 0.7
SIX3O95343 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SIX3O95343 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.45■□□□□ 0.7
SIX3O95343 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
SIX3O95343 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.45■□□□□ 0.7
SIX3O95343 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SIX3O95343 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.45■□□□□ 0.7
SIX3O95343 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.45■□□□□ 0.7
SIX3O95343 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.45■□□□□ 0.7
SIX3O95343 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SIX3O95343 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SIX3O95343 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SIX3O95343 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SIX3O95343 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.44■□□□□ 0.7
SIX3O95343 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
SIX3O95343 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SIX3O95343 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.44■□□□□ 0.7
SIX3O95343 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX3O95343 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX3O95343 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX3O95343 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX3O95343 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX3O95343 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX3O95343 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SIX3O95343 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX3O95343 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX3O95343 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX3O95343 KRT17P1-201ENST00000399211 1546 ntBASIC19.44■□□□□ 0.7
SIX3O95343 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SIX3O95343 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SIX3O95343 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
SIX3O95343 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX3O95343 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.44■□□□□ 0.7
SIX3O95343 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX3O95343 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SIX3O95343 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
SIX3O95343 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.43■□□□□ 0.7
SIX3O95343 KRT8P20-201ENST00000423953 1409 ntBASIC19.43■□□□□ 0.7
SIX3O95343 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX3O95343 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX3O95343 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX3O95343 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX3O95343 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.43■□□□□ 0.7
SIX3O95343 OR10C1-204ENST00000622521 1039 ntBASIC19.43■□□□□ 0.7
SIX3O95343 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX3O95343 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX3O95343 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SIX3O95343 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.43■□□□□ 0.7
SIX3O95343 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
SIX3O95343 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.43■□□□□ 0.7
SIX3O95343 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.43■□□□□ 0.7
SIX3O95343 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SIX3O95343 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms