Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX2-2O95096 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.44■□□□□ 0.54
NKX2-2O95096 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
NKX2-2O95096 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
NKX2-2O95096 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-2O95096 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.43■□□□□ 0.54
NKX2-2O95096 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-2O95096 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-2O95096 AC009237.14-201ENST00000609975 1594 ntBASIC18.43■□□□□ 0.54
NKX2-2O95096 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-2O95096 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-2O95096 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.43■□□□□ 0.54
NKX2-2O95096 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.43■□□□□ 0.54
NKX2-2O95096 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-2O95096 AL390719.1-204ENST00000412397 1219 ntBASIC18.43■□□□□ 0.54
NKX2-2O95096 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.43■□□□□ 0.54
NKX2-2O95096 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-2O95096 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
NKX2-2O95096 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-2O95096 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-2O95096 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-2O95096 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-2O95096 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.43■□□□□ 0.54
NKX2-2O95096 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.42■□□□□ 0.54
NKX2-2O95096 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX2-2O95096 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX2-2O95096 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.42■□□□□ 0.54
NKX2-2O95096 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.42■□□□□ 0.54
NKX2-2O95096 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX2-2O95096 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX2-2O95096 ID1-201ENST00000376105 1233 ntBASIC18.42■□□□□ 0.54
NKX2-2O95096 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
NKX2-2O95096 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.42■□□□□ 0.54
NKX2-2O95096 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.42■□□□□ 0.54
NKX2-2O95096 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.42■□□□□ 0.54
NKX2-2O95096 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.42■□□□□ 0.54
NKX2-2O95096 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX2-2O95096 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
NKX2-2O95096 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX2-2O95096 AFG3L1P-217ENST00000557444 2447 ntBASIC18.42■□□□□ 0.54
NKX2-2O95096 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
NKX2-2O95096 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.42■□□□□ 0.54
NKX2-2O95096 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.41■□□□□ 0.54
NKX2-2O95096 PHGDH-210ENST00000641115 1638 ntBASIC18.41■□□□□ 0.54
NKX2-2O95096 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NKX2-2O95096 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
NKX2-2O95096 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.41■□□□□ 0.54
NKX2-2O95096 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NKX2-2O95096 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NKX2-2O95096 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NKX2-2O95096 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NKX2-2O95096 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NKX2-2O95096 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.41■□□□□ 0.54
NKX2-2O95096 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.41■□□□□ 0.54
NKX2-2O95096 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
NKX2-2O95096 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
NKX2-2O95096 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.41■□□□□ 0.54
NKX2-2O95096 AC060766.5-201ENST00000590539 871 ntBASIC18.41■□□□□ 0.54
NKX2-2O95096 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.41■□□□□ 0.54
NKX2-2O95096 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.41■□□□□ 0.54
NKX2-2O95096 AP001271.2-201ENST00000624018 1556 ntBASIC18.41■□□□□ 0.54
NKX2-2O95096 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
NKX2-2O95096 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NKX2-2O95096 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.41■□□□□ 0.54
NKX2-2O95096 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.41■□□□□ 0.54
NKX2-2O95096 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NKX2-2O95096 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NKX2-2O95096 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.4■□□□□ 0.54
NKX2-2O95096 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NKX2-2O95096 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
NKX2-2O95096 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
NKX2-2O95096 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
NKX2-2O95096 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
NKX2-2O95096 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NKX2-2O95096 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NKX2-2O95096 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.4■□□□□ 0.54
NKX2-2O95096 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
NKX2-2O95096 AC092368.3-202ENST00000574180 1591 ntBASIC18.4■□□□□ 0.54
NKX2-2O95096 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NKX2-2O95096 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.4■□□□□ 0.54
NKX2-2O95096 AL355802.2-201ENST00000402069 882 ntBASIC18.4■□□□□ 0.54
NKX2-2O95096 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.4■□□□□ 0.54
NKX2-2O95096 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NKX2-2O95096 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NKX2-2O95096 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.4■□□□□ 0.54
NKX2-2O95096 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
NKX2-2O95096 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.54
NKX2-2O95096 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NKX2-2O95096 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NKX2-2O95096 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NKX2-2O95096 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.39■□□□□ 0.53
NKX2-2O95096 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NKX2-2O95096 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NKX2-2O95096 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NKX2-2O95096 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NKX2-2O95096 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.39■□□□□ 0.53
NKX2-2O95096 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.39■□□□□ 0.53
NKX2-2O95096 PNMA6B-201ENST00000538162 1200 ntBASIC18.39■□□□□ 0.53
NKX2-2O95096 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.39■□□□□ 0.53
NKX2-2O95096 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms