Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PTCD1O75127 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PTCD1O75127 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
PTCD1O75127 CALM3-202ENST00000391918 702 ntTSL 2 BASIC25.69■■□□□ 1.7
PTCD1O75127 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC25.69■■□□□ 1.7
PTCD1O75127 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC25.69■■□□□ 1.7
PTCD1O75127 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PTCD1O75127 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
PTCD1O75127 KRT16P1-201ENST00000399124 1418 ntBASIC25.69■■□□□ 1.7
PTCD1O75127 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC25.69■■□□□ 1.7
PTCD1O75127 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PTCD1O75127 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
PTCD1O75127 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PTCD1O75127 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
PTCD1O75127 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PTCD1O75127 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC25.68■■□□□ 1.7
PTCD1O75127 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC25.68■■□□□ 1.7
PTCD1O75127 NT5C-211ENST00000582170 653 ntTSL 3 BASIC25.68■■□□□ 1.7
PTCD1O75127 AC010947.1-201ENST00000623454 693 ntBASIC25.68■■□□□ 1.7
PTCD1O75127 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC25.68■■□□□ 1.7
PTCD1O75127 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC25.68■■□□□ 1.7
PTCD1O75127 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC25.68■■□□□ 1.7
PTCD1O75127 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
PTCD1O75127 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
PTCD1O75127 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
PTCD1O75127 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
PTCD1O75127 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC25.67■■□□□ 1.7
PTCD1O75127 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
PTCD1O75127 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC25.67■■□□□ 1.7
PTCD1O75127 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
PTCD1O75127 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
PTCD1O75127 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC25.67■■□□□ 1.7
PTCD1O75127 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC25.67■■□□□ 1.7
PTCD1O75127 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC25.67■■□□□ 1.7
PTCD1O75127 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC25.67■■□□□ 1.7
PTCD1O75127 FITM1-202ENST00000559294 800 ntBASIC25.67■■□□□ 1.7
PTCD1O75127 NAPSB-206ENST00000562112 1266 ntBASIC25.67■■□□□ 1.7
PTCD1O75127 LINC00565-201ENST00000562710 2331 ntBASIC25.67■■□□□ 1.7
PTCD1O75127 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC25.67■■□□□ 1.7
PTCD1O75127 AC005229.4-201ENST00000610085 2198 ntBASIC25.67■■□□□ 1.7
PTCD1O75127 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC25.67■■□□□ 1.7
PTCD1O75127 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
PTCD1O75127 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
PTCD1O75127 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC25.67■■□□□ 1.7
PTCD1O75127 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
PTCD1O75127 ERF-202ENST00000440177 2032 ntTSL 2 BASIC25.66■■□□□ 1.7
PTCD1O75127 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
PTCD1O75127 FP700111.2-201ENST00000619190 1892 ntBASIC25.66■■□□□ 1.7
PTCD1O75127 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC25.66■■□□□ 1.7
PTCD1O75127 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC25.66■■□□□ 1.7
PTCD1O75127 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC25.66■■□□□ 1.7
PTCD1O75127 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC25.66■■□□□ 1.7
PTCD1O75127 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
PTCD1O75127 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC25.66■■□□□ 1.7
PTCD1O75127 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
PTCD1O75127 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC25.66■■□□□ 1.7
PTCD1O75127 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC25.66■■□□□ 1.7
PTCD1O75127 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
PTCD1O75127 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
PTCD1O75127 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC25.66■■□□□ 1.7
PTCD1O75127 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
PTCD1O75127 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
PTCD1O75127 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC25.65■■□□□ 1.7
PTCD1O75127 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC25.65■■□□□ 1.7
PTCD1O75127 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC25.65■■□□□ 1.7
PTCD1O75127 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
PTCD1O75127 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
PTCD1O75127 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC25.65■■□□□ 1.7
PTCD1O75127 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
PTCD1O75127 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
PTCD1O75127 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC25.64■■□□□ 1.7
PTCD1O75127 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
PTCD1O75127 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
PTCD1O75127 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
PTCD1O75127 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
PTCD1O75127 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC25.64■■□□□ 1.7
PTCD1O75127 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC25.64■■□□□ 1.7
PTCD1O75127 AC113347.1-201ENST00000413321 391 ntBASIC25.64■■□□□ 1.7
PTCD1O75127 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC25.64■■□□□ 1.7
PTCD1O75127 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
PTCD1O75127 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.69
PTCD1O75127 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
PTCD1O75127 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
PTCD1O75127 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC25.63■■□□□ 1.69
PTCD1O75127 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTCD1O75127 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC25.63■■□□□ 1.69
PTCD1O75127 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTCD1O75127 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTCD1O75127 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC25.63■■□□□ 1.69
PTCD1O75127 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC25.63■■□□□ 1.69
PTCD1O75127 AL590326.2-201ENST00000625139 305 ntBASIC25.63■■□□□ 1.69
PTCD1O75127 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
PTCD1O75127 WWC2-AS2-201ENST00000578387 2183 ntBASIC25.63■■□□□ 1.69
PTCD1O75127 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTCD1O75127 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTCD1O75127 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC25.63■■□□□ 1.69
PTCD1O75127 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
PTCD1O75127 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC25.62■■□□□ 1.69
PTCD1O75127 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC25.62■■□□□ 1.69
PTCD1O75127 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms