Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SGCEO43556 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SGCEO43556 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SGCEO43556 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.6■□□□□ 0.41
SGCEO43556 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SGCEO43556 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SGCEO43556 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SGCEO43556 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SGCEO43556 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.59■□□□□ 0.41
SGCEO43556 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.59■□□□□ 0.41
SGCEO43556 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SGCEO43556 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.59■□□□□ 0.41
SGCEO43556 H19-201ENST00000411754 1788 ntTSL 5 BASIC17.59■□□□□ 0.41
SGCEO43556 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
SGCEO43556 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SGCEO43556 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SGCEO43556 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SGCEO43556 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
SGCEO43556 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
SGCEO43556 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC17.59■□□□□ 0.41
SGCEO43556 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
SGCEO43556 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.59■□□□□ 0.41
SGCEO43556 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SGCEO43556 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
SGCEO43556 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.58■□□□□ 0.41
SGCEO43556 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SGCEO43556 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.58■□□□□ 0.41
SGCEO43556 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SGCEO43556 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SGCEO43556 AC112907.3-201ENST00000577781 2400 ntBASIC17.58■□□□□ 0.41
SGCEO43556 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.58■□□□□ 0.4
SGCEO43556 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.58■□□□□ 0.4
SGCEO43556 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.58■□□□□ 0.4
SGCEO43556 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.58■□□□□ 0.4
SGCEO43556 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.58■□□□□ 0.4
SGCEO43556 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.58■□□□□ 0.4
SGCEO43556 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SGCEO43556 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.58■□□□□ 0.4
SGCEO43556 AL121832.2-201ENST00000610979 668 ntBASIC17.58■□□□□ 0.4
SGCEO43556 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.58■□□□□ 0.4
SGCEO43556 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC17.58■□□□□ 0.4
SGCEO43556 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SGCEO43556 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SGCEO43556 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SGCEO43556 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.58■□□□□ 0.4
SGCEO43556 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
SGCEO43556 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SGCEO43556 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SGCEO43556 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SGCEO43556 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SGCEO43556 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SGCEO43556 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SGCEO43556 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SGCEO43556 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SGCEO43556 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SGCEO43556 PCDHAC2-203ENST00000615316 3011 ntBASIC17.57■□□□□ 0.4
SGCEO43556 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SGCEO43556 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SGCEO43556 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.57■□□□□ 0.4
SGCEO43556 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SGCEO43556 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.57■□□□□ 0.4
SGCEO43556 BX276092.2-201ENST00000417668 665 ntBASIC17.57■□□□□ 0.4
SGCEO43556 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.57■□□□□ 0.4
SGCEO43556 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SGCEO43556 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SGCEO43556 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SGCEO43556 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.57■□□□□ 0.4
SGCEO43556 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SGCEO43556 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SGCEO43556 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SGCEO43556 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SGCEO43556 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SGCEO43556 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC17.57■□□□□ 0.4
SGCEO43556 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SGCEO43556 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SGCEO43556 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SGCEO43556 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SGCEO43556 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SGCEO43556 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
SGCEO43556 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SGCEO43556 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.56■□□□□ 0.4
SGCEO43556 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SGCEO43556 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.56■□□□□ 0.4
SGCEO43556 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.56■□□□□ 0.4
SGCEO43556 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SGCEO43556 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SGCEO43556 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SGCEO43556 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.56■□□□□ 0.4
SGCEO43556 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.56■□□□□ 0.4
SGCEO43556 PPP1R14BP3-201ENST00000509033 445 ntBASIC17.56■□□□□ 0.4
SGCEO43556 AC083906.2-201ENST00000511578 360 ntBASIC17.56■□□□□ 0.4
SGCEO43556 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.56■□□□□ 0.4
SGCEO43556 C2orf69P4-201ENST00000565394 541 ntBASIC17.56■□□□□ 0.4
SGCEO43556 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.56■□□□□ 0.4
SGCEO43556 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SGCEO43556 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.56■□□□□ 0.4
SGCEO43556 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SGCEO43556 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.56■□□□□ 0.4
SGCEO43556 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.56■□□□□ 0.4
SGCEO43556 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms