Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.88
MSH5O43196 GPALPP1-203ENST00000379151 1393 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.88
MSH5O43196 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC26.83■■□□□ 1.88
MSH5O43196 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC26.83■■□□□ 1.88
MSH5O43196 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC26.82■■□□□ 1.88
MSH5O43196 PCDHAC2-203ENST00000615316 3011 ntBASIC26.82■■□□□ 1.88
MSH5O43196 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC26.82■■□□□ 1.88
MSH5O43196 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC26.82■■□□□ 1.88
MSH5O43196 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC26.82■■□□□ 1.88
MSH5O43196 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC26.82■■□□□ 1.88
MSH5O43196 CLCN5-205ENST00000482218 449 ntTSL 3 BASIC26.82■■□□□ 1.88
MSH5O43196 PNMA6B-201ENST00000538162 1200 ntBASIC26.82■■□□□ 1.88
MSH5O43196 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC26.82■■□□□ 1.88
MSH5O43196 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC26.82■■□□□ 1.88
MSH5O43196 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC26.82■■□□□ 1.88
MSH5O43196 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
MSH5O43196 AL121929.2-201ENST00000609691 1432 ntBASIC26.82■■□□□ 1.88
MSH5O43196 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC26.81■■□□□ 1.88
MSH5O43196 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
MSH5O43196 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
MSH5O43196 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC26.81■■□□□ 1.88
MSH5O43196 AC092368.3-202ENST00000574180 1591 ntBASIC26.81■■□□□ 1.88
MSH5O43196 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
MSH5O43196 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC26.81■■□□□ 1.88
MSH5O43196 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
MSH5O43196 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC26.81■■□□□ 1.88
MSH5O43196 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC26.81■■□□□ 1.88
MSH5O43196 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC26.81■■□□□ 1.88
MSH5O43196 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC26.81■■□□□ 1.88
MSH5O43196 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
MSH5O43196 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
MSH5O43196 KRT8P2-201ENST00000556193 944 ntBASIC26.81■■□□□ 1.88
MSH5O43196 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC26.81■■□□□ 1.88
MSH5O43196 AC243732.1-201ENST00000612648 864 ntBASIC26.81■■□□□ 1.88
MSH5O43196 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
MSH5O43196 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC26.81■■□□□ 1.88
MSH5O43196 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
MSH5O43196 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC26.8■■□□□ 1.88
MSH5O43196 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
MSH5O43196 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
MSH5O43196 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
MSH5O43196 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC26.8■■□□□ 1.88
MSH5O43196 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
MSH5O43196 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC26.8■■□□□ 1.88
MSH5O43196 AC073310.1-201ENST00000423226 1033 ntBASIC26.8■■□□□ 1.88
MSH5O43196 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC26.8■■□□□ 1.88
MSH5O43196 ABHD17AP6-201ENST00000458502 1044 ntBASIC26.8■■□□□ 1.88
MSH5O43196 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC26.8■■□□□ 1.88
MSH5O43196 AC004672.2-201ENST00000537181 574 ntTSL 2 BASIC26.8■■□□□ 1.88
MSH5O43196 BX088651.1-201ENST00000540551 451 ntBASIC26.8■■□□□ 1.88
MSH5O43196 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
MSH5O43196 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
MSH5O43196 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
MSH5O43196 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
MSH5O43196 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC26.8■■□□□ 1.88
MSH5O43196 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
MSH5O43196 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
MSH5O43196 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC26.79■■□□□ 1.88
MSH5O43196 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC26.79■■□□□ 1.88
MSH5O43196 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH5O43196 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH5O43196 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH5O43196 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC26.79■■□□□ 1.88
MSH5O43196 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
MSH5O43196 IFT20-206ENST00000578122 834 ntTSL 2 BASIC26.79■■□□□ 1.88
MSH5O43196 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC26.79■■□□□ 1.88
MSH5O43196 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC26.79■■□□□ 1.88
MSH5O43196 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC26.79■■□□□ 1.88
MSH5O43196 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
MSH5O43196 AC061975.6-201ENST00000579045 1553 ntBASIC26.79■■□□□ 1.88
MSH5O43196 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
MSH5O43196 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH5O43196 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH5O43196 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC26.78■■□□□ 1.88
MSH5O43196 SPATA45-201ENST00000332912 506 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
MSH5O43196 MDFI-202ENST00000373050 809 ntTSL 2 BASIC26.78■■□□□ 1.88
MSH5O43196 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC26.78■■□□□ 1.88
MSH5O43196 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC26.78■■□□□ 1.88
MSH5O43196 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC26.78■■□□□ 1.88
MSH5O43196 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
MSH5O43196 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
MSH5O43196 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
MSH5O43196 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC26.78■■□□□ 1.88
MSH5O43196 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
MSH5O43196 ME2-206ENST00000638410 2289 ntTSL 5 BASIC26.77■■□□□ 1.88
MSH5O43196 ME2-210ENST00000639255 2262 ntTSL 5 BASIC26.77■■□□□ 1.88
MSH5O43196 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC26.77■■□□□ 1.88
MSH5O43196 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
MSH5O43196 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC26.77■■□□□ 1.88
MSH5O43196 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
MSH5O43196 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC26.77■■□□□ 1.88
MSH5O43196 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC26.77■■□□□ 1.88
MSH5O43196 AL445228.1-201ENST00000449525 333 ntTSL 3 BASIC26.77■■□□□ 1.88
MSH5O43196 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC26.77■■□□□ 1.88
MSH5O43196 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC26.77■■□□□ 1.88
MSH5O43196 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
MSH5O43196 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
MSH5O43196 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC26.77■■□□□ 1.88
MSH5O43196 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
MSH5O43196 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms