Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL6A5A8TX70 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL6A5A8TX70 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC15.6■□□□□ 0.09
COL6A5A8TX70 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC15.6■□□□□ 0.09
COL6A5A8TX70 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC15.6■□□□□ 0.09
COL6A5A8TX70 AC106795.1-205ENST00000512851 1056 ntBASIC15.6■□□□□ 0.09
COL6A5A8TX70 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC15.6■□□□□ 0.09
COL6A5A8TX70 AL732292.2-201ENST00000609649 430 ntBASIC15.6■□□□□ 0.09
COL6A5A8TX70 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC15.6■□□□□ 0.09
COL6A5A8TX70 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL6A5A8TX70 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC15.6■□□□□ 0.09
COL6A5A8TX70 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
COL6A5A8TX70 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
COL6A5A8TX70 CNP-204ENST00000472031 1019 ntTSL 2 BASIC15.6■□□□□ 0.09
COL6A5A8TX70 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC15.6■□□□□ 0.09
COL6A5A8TX70 SLC25A6P4-201ENST00000586535 553 ntBASIC15.6■□□□□ 0.09
COL6A5A8TX70 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC15.6■□□□□ 0.09
COL6A5A8TX70 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL6A5A8TX70 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC15.59■□□□□ 0.09
COL6A5A8TX70 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC15.59■□□□□ 0.09
COL6A5A8TX70 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL6A5A8TX70 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL6A5A8TX70 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL6A5A8TX70 BX640515.1-201ENST00000617215 977 ntBASIC15.59■□□□□ 0.09
COL6A5A8TX70 AL023973.1-201ENST00000624619 620 ntBASIC15.59■□□□□ 0.09
COL6A5A8TX70 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL6A5A8TX70 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL6A5A8TX70 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
COL6A5A8TX70 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC15.59■□□□□ 0.09
COL6A5A8TX70 PRELID1P1-202ENST00000567272 903 ntBASIC15.59■□□□□ 0.09
COL6A5A8TX70 COMT-203ENST00000403184 2217 ntTSL 2 BASIC15.59■□□□□ 0.09
COL6A5A8TX70 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL6A5A8TX70 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
COL6A5A8TX70 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
COL6A5A8TX70 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
COL6A5A8TX70 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
COL6A5A8TX70 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
COL6A5A8TX70 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
COL6A5A8TX70 RCC2P6-201ENST00000526625 1557 ntBASIC15.58■□□□□ 0.09
COL6A5A8TX70 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL6A5A8TX70 TSPY17P-201ENST00000450329 467 ntBASIC15.58■□□□□ 0.08
COL6A5A8TX70 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC15.58■□□□□ 0.08
COL6A5A8TX70 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
COL6A5A8TX70 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
COL6A5A8TX70 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL6A5A8TX70 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL6A5A8TX70 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC15.58■□□□□ 0.08
COL6A5A8TX70 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL6A5A8TX70 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL6A5A8TX70 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
COL6A5A8TX70 AP000692.2-201ENST00000608391 879 ntBASIC15.58■□□□□ 0.08
COL6A5A8TX70 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
COL6A5A8TX70 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
COL6A5A8TX70 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL6A5A8TX70 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
COL6A5A8TX70 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC15.57■□□□□ 0.08
COL6A5A8TX70 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL6A5A8TX70 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL6A5A8TX70 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC15.57■□□□□ 0.08
COL6A5A8TX70 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.57■□□□□ 0.08
COL6A5A8TX70 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL6A5A8TX70 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC15.57■□□□□ 0.08
COL6A5A8TX70 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
COL6A5A8TX70 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC15.57■□□□□ 0.08
COL6A5A8TX70 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL6A5A8TX70 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC15.57■□□□□ 0.08
COL6A5A8TX70 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC15.57■□□□□ 0.08
COL6A5A8TX70 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL6A5A8TX70 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL6A5A8TX70 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL6A5A8TX70 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC15.57■□□□□ 0.08
COL6A5A8TX70 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL6A5A8TX70 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL6A5A8TX70 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL6A5A8TX70 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL6A5A8TX70 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL6A5A8TX70 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC15.57■□□□□ 0.08
COL6A5A8TX70 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL6A5A8TX70 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL6A5A8TX70 YBX1P10-201ENST00000444752 975 ntBASIC15.56■□□□□ 0.08
COL6A5A8TX70 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.56■□□□□ 0.08
COL6A5A8TX70 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC15.56■□□□□ 0.08
COL6A5A8TX70 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
COL6A5A8TX70 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL6A5A8TX70 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL6A5A8TX70 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL6A5A8TX70 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL6A5A8TX70 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL6A5A8TX70 AC004951.3-201ENST00000418645 1148 ntBASIC15.56■□□□□ 0.08
COL6A5A8TX70 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
COL6A5A8TX70 KRT18P38-201ENST00000449496 1282 ntBASIC15.56■□□□□ 0.08
COL6A5A8TX70 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC15.56■□□□□ 0.08
COL6A5A8TX70 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL6A5A8TX70 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.56■□□□□ 0.08
COL6A5A8TX70 AL139424.1-201ENST00000607572 797 ntBASIC15.56■□□□□ 0.08
COL6A5A8TX70 AL031008.1-201ENST00000619963 541 ntBASIC15.56■□□□□ 0.08
COL6A5A8TX70 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC15.56■□□□□ 0.08
COL6A5A8TX70 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC15.56■□□□□ 0.08
COL6A5A8TX70 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL6A5A8TX70 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms