Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.85■□□□□ 0.93
CLRN3Q8NCR9 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLRN3Q8NCR9 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
CLRN3Q8NCR9 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLRN3Q8NCR9 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLRN3Q8NCR9 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLRN3Q8NCR9 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLRN3Q8NCR9 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLRN3Q8NCR9 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.82■□□□□ 0.92
CLRN3Q8NCR9 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLRN3Q8NCR9 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLRN3Q8NCR9 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLRN3Q8NCR9 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLRN3Q8NCR9 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CLRN3Q8NCR9 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLRN3Q8NCR9 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLRN3Q8NCR9 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLRN3Q8NCR9 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLRN3Q8NCR9 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLRN3Q8NCR9 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLRN3Q8NCR9 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLRN3Q8NCR9 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLRN3Q8NCR9 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLRN3Q8NCR9 DRD5P2-201ENST00000421395 2012 ntBASIC20.78■□□□□ 0.92
CLRN3Q8NCR9 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.77■□□□□ 0.92
CLRN3Q8NCR9 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
CLRN3Q8NCR9 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.76■□□□□ 0.91
CLRN3Q8NCR9 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CLRN3Q8NCR9 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLRN3Q8NCR9 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.75■□□□□ 0.91
CLRN3Q8NCR9 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CLRN3Q8NCR9 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLRN3Q8NCR9 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLRN3Q8NCR9 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLRN3Q8NCR9 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLRN3Q8NCR9 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLRN3Q8NCR9 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLRN3Q8NCR9 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLRN3Q8NCR9 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.73■□□□□ 0.91
CLRN3Q8NCR9 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.73■□□□□ 0.91
CLRN3Q8NCR9 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLRN3Q8NCR9 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLRN3Q8NCR9 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLRN3Q8NCR9 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.72■□□□□ 0.91
CLRN3Q8NCR9 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.72■□□□□ 0.91
CLRN3Q8NCR9 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLRN3Q8NCR9 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLRN3Q8NCR9 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLRN3Q8NCR9 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLRN3Q8NCR9 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CLRN3Q8NCR9 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLRN3Q8NCR9 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CLRN3Q8NCR9 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLRN3Q8NCR9 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLRN3Q8NCR9 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLRN3Q8NCR9 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CLRN3Q8NCR9 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.69■□□□□ 0.9
CLRN3Q8NCR9 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLRN3Q8NCR9 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.69■□□□□ 0.9
CLRN3Q8NCR9 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLRN3Q8NCR9 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CLRN3Q8NCR9 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CLRN3Q8NCR9 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLRN3Q8NCR9 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
CLRN3Q8NCR9 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLRN3Q8NCR9 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
CLRN3Q8NCR9 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
CLRN3Q8NCR9 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CLRN3Q8NCR9 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CLRN3Q8NCR9 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLRN3Q8NCR9 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLRN3Q8NCR9 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLRN3Q8NCR9 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLRN3Q8NCR9 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CLRN3Q8NCR9 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CLRN3Q8NCR9 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CLRN3Q8NCR9 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
CLRN3Q8NCR9 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CLRN3Q8NCR9 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CLRN3Q8NCR9 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
CLRN3Q8NCR9 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CLRN3Q8NCR9 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLRN3Q8NCR9 LINC00543-201ENST00000567234 1845 ntBASIC20.64■□□□□ 0.89
CLRN3Q8NCR9 AC020928.2-201ENST00000588717 2197 ntBASIC20.63■□□□□ 0.89
CLRN3Q8NCR9 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLRN3Q8NCR9 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CLRN3Q8NCR9 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CLRN3Q8NCR9 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLRN3Q8NCR9 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLRN3Q8NCR9 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLRN3Q8NCR9 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CLRN3Q8NCR9 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLRN3Q8NCR9 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLRN3Q8NCR9 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLRN3Q8NCR9 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC20.6■□□□□ 0.89
CLRN3Q8NCR9 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CLRN3Q8NCR9 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC20.6■□□□□ 0.89
CLRN3Q8NCR9 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC20.6■□□□□ 0.89
CLRN3Q8NCR9 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLRN3Q8NCR9 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms