Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC30.99■■■□□ 2.55
CTR9Q6PD62 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CTR9Q6PD62 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC30.98■■■□□ 2.55
CTR9Q6PD62 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
CTR9Q6PD62 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
CTR9Q6PD62 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC30.98■■■□□ 2.55
CTR9Q6PD62 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CTR9Q6PD62 ST7-202ENST00000323984 2142 ntTSL 5 BASIC30.97■■■□□ 2.55
CTR9Q6PD62 ST7-207ENST00000393449 2127 ntTSL 5 BASIC30.97■■■□□ 2.55
CTR9Q6PD62 DUX4L11-201ENST00000611504 1267 ntBASIC30.95■■■□□ 2.55
CTR9Q6PD62 DUX4L12-201ENST00000614593 1267 ntBASIC30.95■■■□□ 2.55
CTR9Q6PD62 DUX4L14-201ENST00000621227 1267 ntBASIC30.95■■■□□ 2.55
CTR9Q6PD62 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
CTR9Q6PD62 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.54
CTR9Q6PD62 LINC00273-201ENST00000539813 1452 ntBASIC30.95■■■□□ 2.54
CTR9Q6PD62 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
CTR9Q6PD62 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CTR9Q6PD62 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.92■■■□□ 2.54
CTR9Q6PD62 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
CTR9Q6PD62 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.92■■■□□ 2.54
CTR9Q6PD62 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.91■■■□□ 2.54
CTR9Q6PD62 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC30.91■■■□□ 2.54
CTR9Q6PD62 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.9■■■□□ 2.54
CTR9Q6PD62 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC30.89■■■□□ 2.54
CTR9Q6PD62 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC30.89■■■□□ 2.54
CTR9Q6PD62 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.88■■■□□ 2.53
CTR9Q6PD62 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.88■■■□□ 2.53
CTR9Q6PD62 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CTR9Q6PD62 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
CTR9Q6PD62 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC30.86■■■□□ 2.53
CTR9Q6PD62 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC30.86■■■□□ 2.53
CTR9Q6PD62 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC30.85■■■□□ 2.53
CTR9Q6PD62 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.85■■■□□ 2.53
CTR9Q6PD62 MIR3648-2-201ENST00000581792 180 ntBASIC30.85■■■□□ 2.53
CTR9Q6PD62 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.85■■■□□ 2.53
CTR9Q6PD62 MIR3648-1-201ENST00000615959 180 ntBASIC30.85■■■□□ 2.53
CTR9Q6PD62 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CTR9Q6PD62 HLA-V-202ENST00000446817 847 ntBASIC30.84■■■□□ 2.53
CTR9Q6PD62 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC30.84■■■□□ 2.53
CTR9Q6PD62 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC30.84■■■□□ 2.53
CTR9Q6PD62 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.83■■■□□ 2.53
CTR9Q6PD62 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC30.83■■■□□ 2.53
CTR9Q6PD62 CR559946.2-201ENST00000623684 991 ntBASIC30.83■■■□□ 2.53
CTR9Q6PD62 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.83■■■□□ 2.53
CTR9Q6PD62 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
CTR9Q6PD62 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CTR9Q6PD62 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CTR9Q6PD62 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC30.82■■■□□ 2.52
CTR9Q6PD62 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC30.81■■■□□ 2.52
CTR9Q6PD62 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC30.81■■■□□ 2.52
CTR9Q6PD62 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CTR9Q6PD62 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
CTR9Q6PD62 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CTR9Q6PD62 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC30.8■■■□□ 2.52
CTR9Q6PD62 DUX4L13-201ENST00000554103 1267 ntBASIC30.8■■■□□ 2.52
CTR9Q6PD62 AC016575.1-201ENST00000607026 382 ntBASIC30.8■■■□□ 2.52
CTR9Q6PD62 DUX4L15-201ENST00000611059 1267 ntBASIC30.8■■■□□ 2.52
CTR9Q6PD62 DUX4L23-201ENST00000615195 1269 ntBASIC30.8■■■□□ 2.52
CTR9Q6PD62 DUX4L24-201ENST00000617576 1269 ntBASIC30.8■■■□□ 2.52
CTR9Q6PD62 DUX4L22-201ENST00000618238 1269 ntBASIC30.8■■■□□ 2.52
CTR9Q6PD62 DUX4L20-201ENST00000619712 1269 ntBASIC30.8■■■□□ 2.52
CTR9Q6PD62 DUX4L21-201ENST00000622058 1269 ntBASIC30.8■■■□□ 2.52
CTR9Q6PD62 DUX4L10-201ENST00000622460 1267 ntBASIC30.8■■■□□ 2.52
CTR9Q6PD62 DUX4L25-201ENST00000624915 1269 ntBASIC30.8■■■□□ 2.52
CTR9Q6PD62 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.8■■■□□ 2.52
CTR9Q6PD62 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CTR9Q6PD62 AC135983.2-203ENST00000454486 1613 ntBASIC30.8■■■□□ 2.52
CTR9Q6PD62 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC30.79■■■□□ 2.52
CTR9Q6PD62 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
CTR9Q6PD62 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CTR9Q6PD62 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC30.79■■■□□ 2.52
CTR9Q6PD62 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CTR9Q6PD62 AGPS-202ENST00000409888 815 ntTSL 4 BASIC30.78■■■□□ 2.52
CTR9Q6PD62 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
CTR9Q6PD62 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC30.78■■■□□ 2.52
CTR9Q6PD62 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
CTR9Q6PD62 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
CTR9Q6PD62 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.77■■■□□ 2.52
CTR9Q6PD62 CHML-204ENST00000638121 920 ntTSL 2 BASIC30.77■■■□□ 2.52
CTR9Q6PD62 WHAMMP2-203ENST00000563942 1603 ntBASIC30.76■■■□□ 2.52
CTR9Q6PD62 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CTR9Q6PD62 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CTR9Q6PD62 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC30.76■■■□□ 2.51
CTR9Q6PD62 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.76■■■□□ 2.51
CTR9Q6PD62 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CTR9Q6PD62 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.75■■■□□ 2.51
CTR9Q6PD62 ABCB10P1-201ENST00000614297 2181 ntBASIC30.75■■■□□ 2.51
CTR9Q6PD62 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CTR9Q6PD62 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC30.74■■■□□ 2.51
CTR9Q6PD62 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CTR9Q6PD62 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CTR9Q6PD62 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC30.73■■■□□ 2.51
CTR9Q6PD62 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.73■■■□□ 2.51
CTR9Q6PD62 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC30.73■■■□□ 2.51
CTR9Q6PD62 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
CTR9Q6PD62 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC30.72■■■□□ 2.51
CTR9Q6PD62 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CTR9Q6PD62 MIR639-201ENST00000384974 98 ntBASIC30.71■■■□□ 2.51
CTR9Q6PD62 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.51
CTR9Q6PD62 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms