Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CKS1BP61024 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CKS1BP61024 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC17.81■□□□□ 0.44
CKS1BP61024 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CKS1BP61024 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CKS1BP61024 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CKS1BP61024 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CKS1BP61024 DYNLL1-208ENST00000550178 581 ntBASIC17.81■□□□□ 0.44
CKS1BP61024 ST7-AS1-201ENST00000456775 1889 ntBASIC17.81■□□□□ 0.44
CKS1BP61024 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CKS1BP61024 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CKS1BP61024 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
CKS1BP61024 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CKS1BP61024 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CKS1BP61024 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CKS1BP61024 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
CKS1BP61024 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CKS1BP61024 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CKS1BP61024 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CKS1BP61024 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CKS1BP61024 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CKS1BP61024 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CKS1BP61024 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CKS1BP61024 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CKS1BP61024 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CKS1BP61024 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC17.76■□□□□ 0.43
CKS1BP61024 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CKS1BP61024 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CKS1BP61024 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CKS1BP61024 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC17.74■□□□□ 0.43
CKS1BP61024 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC17.74■□□□□ 0.43
CKS1BP61024 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CKS1BP61024 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CKS1BP61024 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CKS1BP61024 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CKS1BP61024 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CKS1BP61024 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CKS1BP61024 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CKS1BP61024 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CKS1BP61024 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CKS1BP61024 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
CKS1BP61024 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC17.73■□□□□ 0.43
CKS1BP61024 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.72■□□□□ 0.43
CKS1BP61024 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CKS1BP61024 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CKS1BP61024 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CKS1BP61024 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC17.72■□□□□ 0.43
CKS1BP61024 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CKS1BP61024 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CKS1BP61024 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CKS1BP61024 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CKS1BP61024 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CKS1BP61024 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CKS1BP61024 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CKS1BP61024 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CKS1BP61024 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CKS1BP61024 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CKS1BP61024 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CKS1BP61024 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC17.7■□□□□ 0.42
CKS1BP61024 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CKS1BP61024 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CKS1BP61024 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
CKS1BP61024 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CKS1BP61024 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CKS1BP61024 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CKS1BP61024 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CKS1BP61024 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CKS1BP61024 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CKS1BP61024 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CKS1BP61024 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CKS1BP61024 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CKS1BP61024 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CKS1BP61024 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC17.67■□□□□ 0.42
CKS1BP61024 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CKS1BP61024 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CKS1BP61024 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC17.66■□□□□ 0.42
CKS1BP61024 AL031258.1-201ENST00000623562 325 ntBASIC17.66■□□□□ 0.42
CKS1BP61024 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC17.66■□□□□ 0.42
CKS1BP61024 AL135925.1-201ENST00000605920 1701 ntBASIC17.66■□□□□ 0.42
CKS1BP61024 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CKS1BP61024 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CKS1BP61024 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CKS1BP61024 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CKS1BP61024 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CKS1BP61024 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CKS1BP61024 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CKS1BP61024 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
CKS1BP61024 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CKS1BP61024 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC17.64■□□□□ 0.41
CKS1BP61024 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CKS1BP61024 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CKS1BP61024 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CKS1BP61024 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CKS1BP61024 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CKS1BP61024 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
CKS1BP61024 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CKS1BP61024 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CKS1BP61024 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CKS1BP61024 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CKS1BP61024 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 8 ms