Protein–RNA interactions for Protein: P40084

RTR1, RNA polymerase II subunit B1 CTD phosphatase RTR1, yeastyeast

Predicted RBP Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RTR1P40084 SWM1YDR260C 513 nt10.58□□□□□ -0.72
RTR1P40084 SBP1YHL034C 885 nt10.56□□□□□ -0.72
RTR1P40084 SRP102YKL154W 735 nt10.55□□□□□ -0.72
RTR1P40084 YLR280CYLR280C 351 nt10.55□□□□□ -0.72
RTR1P40084 YPT11YNL304W 1254 nt10.55□□□□□ -0.72
RTR1P40084 DMA2YNL116W 1569 nt10.55□□□□□ -0.72
RTR1P40084 GAS1YMR307W 1680 nt10.54□□□□□ -0.72
RTR1P40084 PTC6YCR079W 1329 nt10.54□□□□□ -0.72
RTR1P40084 YFR020WYFR020W 699 nt10.52□□□□□ -0.73
RTR1P40084 ERO1YML130C 1692 nt10.52□□□□□ -0.73
RTR1P40084 HTS1YPR033C 1641 nt10.51□□□□□ -0.73
RTR1P40084 LEU4YNL104C 1860 nt10.51□□□□□ -0.73
RTR1P40084 TGA1tA(UGC)A 73 nt10.5□□□□□ -0.73
RTR1P40084 tA(UGC)EtA(UGC)E 73 nt10.5□□□□□ -0.73
RTR1P40084 tA(UGC)GtA(UGC)G 73 nt10.5□□□□□ -0.73
RTR1P40084 tA(UGC)LtA(UGC)L 73 nt10.5□□□□□ -0.73
RTR1P40084 tA(UGC)OtA(UGC)O 73 nt10.5□□□□□ -0.73
RTR1P40084 THI3YDL080C 1830 nt10.49□□□□□ -0.73
RTR1P40084 YGR210CYGR210C 1236 nt10.48□□□□□ -0.73
RTR1P40084 YMR316C-BYMR316C-B 309 nt10.48□□□□□ -0.73
RTR1P40084 YDR467CYDR467C 327 nt10.47□□□□□ -0.73
RTR1P40084 GPM1YKL152C 744 nt10.47□□□□□ -0.73
RTR1P40084 GGA2YHR108W 1758 nt10.47□□□□□ -0.73
RTR1P40084 HXT10YFL011W 1641 nt10.46□□□□□ -0.74
RTR1P40084 YIA6YIL006W 1122 nt10.45□□□□□ -0.74
RTR1P40084 RSM7YJR113C 744 nt10.43□□□□□ -0.74
RTR1P40084 RIB1YBL033C 1038 nt10.43□□□□□ -0.74
RTR1P40084 YHR218WYHR218W 1812 nt10.42□□□□□ -0.74
RTR1P40084 tE(CUC)DtE(CUC)D 72 nt10.42□□□□□ -0.74
RTR1P40084 tE(CUC)ItE(CUC)I 72 nt10.42□□□□□ -0.74
RTR1P40084 YMR007WYMR007W 381 nt10.41□□□□□ -0.74
RTR1P40084 FCY1YPR062W 477 nt10.41□□□□□ -0.74
RTR1P40084 PSD1YNL169C 1503 nt10.41□□□□□ -0.74
RTR1P40084 SOD2YHR008C 702 nt10.4□□□□□ -0.74
RTR1P40084 YPL108WYPL108W 507 nt10.4□□□□□ -0.74
RTR1P40084 ERG6YML008C 1152 nt10.39□□□□□ -0.75
RTR1P40084 AGP3YFL055W 1677 nt10.38□□□□□ -0.75
RTR1P40084 HEL2YDR266C 1920 nt10.37□□□□□ -0.75
RTR1P40084 INH1YDL181W 258 nt10.37□□□□□ -0.75
RTR1P40084 NPP2YEL016C 1482 nt10.36□□□□□ -0.75
RTR1P40084 YBL095WYBL095W 813 nt10.35□□□□□ -0.75
RTR1P40084 CYT1YOR065W 930 nt10.34□□□□□ -0.75
RTR1P40084 YMR166CYMR166C 1107 nt10.32□□□□□ -0.76
RTR1P40084 YJL160CYJL160C 864 nt10.31□□□□□ -0.76
RTR1P40084 RCR1YBR005W 642 nt10.31□□□□□ -0.76
RTR1P40084 LSP1YPL004C 1026 nt10.31□□□□□ -0.76
RTR1P40084 AAC3YBR085W 924 nt10.31□□□□□ -0.76
RTR1P40084 YMC2YBR104W 990 nt10.31□□□□□ -0.76
RTR1P40084 YLR460CYLR460C 1131 nt10.3□□□□□ -0.76
RTR1P40084 MET22YOL064C 1074 nt10.29□□□□□ -0.76
RTR1P40084 TMS1YDR105C 1422 nt10.28□□□□□ -0.76
RTR1P40084 CAK1YFL029C 1107 nt10.27□□□□□ -0.77
RTR1P40084 MRS4YKR052C 915 nt10.27□□□□□ -0.77
RTR1P40084 RNA170RNA170 169 nt10.27□□□□□ -0.77
RTR1P40084 OCH1YGL038C 1443 nt10.26□□□□□ -0.77
RTR1P40084 PET18YCR020C 648 nt10.26□□□□□ -0.77
RTR1P40084 CHS7YHR142W 951 nt10.25□□□□□ -0.77
RTR1P40084 YER152W-AYER152W-A 567 nt10.23□□□□□ -0.77
RTR1P40084 YJR149WYJR149W 1215 nt10.23□□□□□ -0.77
RTR1P40084 EMC3YKL207W 762 nt10.23□□□□□ -0.77
RTR1P40084 AAT1YKL106W 1356 nt10.23□□□□□ -0.77
RTR1P40084 YMR210WYMR210W 1350 nt10.23□□□□□ -0.77
RTR1P40084 RRT14YIL127C 621 nt10.22□□□□□ -0.77
RTR1P40084 YIR035CYIR035C 765 nt10.22□□□□□ -0.77
RTR1P40084 POP2YNR052C 1302 nt10.22□□□□□ -0.77
RTR1P40084 PDC6YGR087C 1692 nt10.21□□□□□ -0.78
RTR1P40084 TPN1YGL186C 1740 nt10.21□□□□□ -0.78
RTR1P40084 MAE1YKL029C 2010 nt10.2□□□□□ -0.78
RTR1P40084 OLA1YBR025C 1185 nt10.2□□□□□ -0.78
RTR1P40084 MTO1YGL236C 2010 nt10.19□□□□□ -0.78
RTR1P40084 BUB2YMR055C 921 nt10.19□□□□□ -0.78
RTR1P40084 YJL009WYJL009W 327 nt10.18□□□□□ -0.78
RTR1P40084 YRF1-2YER190W 5046 nt10.18□□□□□ -0.78
RTR1P40084 YBR056WYBR056W 1506 nt10.17□□□□□ -0.78
RTR1P40084 snR86snR86 1004 nt10.16□□□□□ -0.78
RTR1P40084 UTR5YEL035C 501 nt10.15□□□□□ -0.78
RTR1P40084 FET5YFL041W 1869 nt10.15□□□□□ -0.79
RTR1P40084 YER156CYER156C 1017 nt10.14□□□□□ -0.79
RTR1P40084 MEP1YGR121C 1479 nt10.14□□□□□ -0.79
RTR1P40084 BXI1YNL305C 894 nt10.13□□□□□ -0.79
RTR1P40084 GRH1YDR517W 1119 nt10.12□□□□□ -0.79
RTR1P40084 RPS6AYPL090C 711 nt10.12□□□□□ -0.79
RTR1P40084 RHO1YPR165W 630 nt10.12□□□□□ -0.79
RTR1P40084 RPS6BYBR181C 711 nt10.12□□□□□ -0.79
RTR1P40084 TRP2YER090W 1524 nt10.12□□□□□ -0.79
RTR1P40084 PAU21YOR394W 495 nt10.11□□□□□ -0.79
RTR1P40084 PAU22YPL282C 495 nt10.11□□□□□ -0.79
RTR1P40084 THI6YPL214C 1623 nt10.11□□□□□ -0.79
RTR1P40084 NBA1YOL070C 1506 nt10.1□□□□□ -0.79
RTR1P40084 YLR072WYLR072W 2082 nt10.08□□□□□ -0.8
RTR1P40084 SHC1YER096W 1539 nt10.08□□□□□ -0.8
RTR1P40084 BUD20YLR074C 501 nt10.08□□□□□ -0.8
RTR1P40084 MFT1YML062C 1179 nt10.08□□□□□ -0.8
RTR1P40084 ADA2YDR448W 1305 nt10.07□□□□□ -0.8
RTR1P40084 TPO4YOR273C 1980 nt10.06□□□□□ -0.8
RTR1P40084 THI73YLR004C 1572 nt10.06□□□□□ -0.8
RTR1P40084 YPT31YER031C 672 nt10.06□□□□□ -0.8
RTR1P40084 HXT11YOL156W 1704 nt10.06□□□□□ -0.8
RTR1P40084 PUP3YER094C 618 nt10.05□□□□□ -0.8
RTR1P40084 YPR084WYPR084W 1371 nt10.04□□□□□ -0.8
Retrieved 100 of 7,029 protein–RNA pairs in 33.4 ms