Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC27.53■■■□□ 2
BDNFP23560 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC27.52■■■□□ 2
BDNFP23560 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
BDNFP23560 DUX4L11-201ENST00000611504 1267 ntBASIC27.52■■■□□ 2
BDNFP23560 DUX4L12-201ENST00000614593 1267 ntBASIC27.52■■■□□ 2
BDNFP23560 DUX4L14-201ENST00000621227 1267 ntBASIC27.52■■■□□ 2
BDNFP23560 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
BDNFP23560 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC27.51■■□□□ 1.99
BDNFP23560 RNF166-209ENST00000567844 633 ntTSL 5 BASIC27.51■■□□□ 1.99
BDNFP23560 ST7-202ENST00000323984 2142 ntTSL 5 BASIC27.5■■□□□ 1.99
BDNFP23560 ST7-207ENST00000393449 2127 ntTSL 5 BASIC27.5■■□□□ 1.99
BDNFP23560 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC27.5■■□□□ 1.99
BDNFP23560 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
BDNFP23560 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC27.5■■□□□ 1.99
BDNFP23560 LINC00273-201ENST00000539813 1452 ntBASIC27.5■■□□□ 1.99
BDNFP23560 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
BDNFP23560 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC27.49■■□□□ 1.99
BDNFP23560 MBP-237ENST00000579129 1052 ntTSL 5 BASIC27.49■■□□□ 1.99
BDNFP23560 HLA-V-202ENST00000446817 847 ntBASIC27.48■■□□□ 1.99
BDNFP23560 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC27.47■■□□□ 1.99
BDNFP23560 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
BDNFP23560 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC27.46■■□□□ 1.99
BDNFP23560 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.46■■□□□ 1.99
BDNFP23560 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC27.45■■□□□ 1.98
BDNFP23560 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
BDNFP23560 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC27.44■■□□□ 1.98
BDNFP23560 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
BDNFP23560 MACF1-219ENST00000484793 834 ntTSL 2 BASIC27.44■■□□□ 1.98
BDNFP23560 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
BDNFP23560 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC27.43■■□□□ 1.98
BDNFP23560 MIR3648-2-201ENST00000581792 180 ntBASIC27.43■■□□□ 1.98
BDNFP23560 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC27.43■■□□□ 1.98
BDNFP23560 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC27.43■■□□□ 1.98
BDNFP23560 MIR3648-1-201ENST00000615959 180 ntBASIC27.43■■□□□ 1.98
BDNFP23560 GDI1-215ENST00000630693 786 ntTSL 4 BASIC27.42■■□□□ 1.98
BDNFP23560 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC27.41■■□□□ 1.98
BDNFP23560 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC27.4■■□□□ 1.98
BDNFP23560 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC27.4■■□□□ 1.98
BDNFP23560 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
BDNFP23560 RPS2-202ENST00000526522 924 ntTSL 2 BASIC27.4■■□□□ 1.98
BDNFP23560 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC27.4■■□□□ 1.98
BDNFP23560 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC27.4■■□□□ 1.98
BDNFP23560 CR559946.2-201ENST00000623684 991 ntBASIC27.4■■□□□ 1.98
BDNFP23560 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC27.4■■□□□ 1.98
BDNFP23560 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC27.39■■□□□ 1.98
BDNFP23560 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
BDNFP23560 AC016575.1-201ENST00000607026 382 ntBASIC27.39■■□□□ 1.98
BDNFP23560 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.98
BDNFP23560 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
BDNFP23560 AGPS-202ENST00000409888 815 ntTSL 4 BASIC27.38■■□□□ 1.97
BDNFP23560 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC27.38■■□□□ 1.97
BDNFP23560 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC27.37■■□□□ 1.97
BDNFP23560 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
BDNFP23560 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC27.37■■□□□ 1.97
BDNFP23560 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC27.37■■□□□ 1.97
BDNFP23560 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
BDNFP23560 DUX4L13-201ENST00000554103 1267 ntBASIC27.37■■□□□ 1.97
BDNFP23560 DUX4L15-201ENST00000611059 1267 ntBASIC27.37■■□□□ 1.97
BDNFP23560 DUX4L23-201ENST00000615195 1269 ntBASIC27.37■■□□□ 1.97
BDNFP23560 DUX4L24-201ENST00000617576 1269 ntBASIC27.37■■□□□ 1.97
BDNFP23560 DUX4L22-201ENST00000618238 1269 ntBASIC27.37■■□□□ 1.97
BDNFP23560 DUX4L20-201ENST00000619712 1269 ntBASIC27.37■■□□□ 1.97
BDNFP23560 DUX4L21-201ENST00000622058 1269 ntBASIC27.37■■□□□ 1.97
BDNFP23560 DUX4L10-201ENST00000622460 1267 ntBASIC27.37■■□□□ 1.97
BDNFP23560 DUX4L25-201ENST00000624915 1269 ntBASIC27.37■■□□□ 1.97
BDNFP23560 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC27.36■■□□□ 1.97
BDNFP23560 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC27.36■■□□□ 1.97
BDNFP23560 CHML-204ENST00000638121 920 ntTSL 2 BASIC27.36■■□□□ 1.97
BDNFP23560 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
BDNFP23560 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
BDNFP23560 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
BDNFP23560 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
BDNFP23560 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC27.35■■□□□ 1.97
BDNFP23560 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
BDNFP23560 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
BDNFP23560 AC135983.2-203ENST00000454486 1613 ntBASIC27.34■■□□□ 1.97
BDNFP23560 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
BDNFP23560 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
BDNFP23560 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
BDNFP23560 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
BDNFP23560 WHAMMP2-203ENST00000563942 1603 ntBASIC27.33■■□□□ 1.97
BDNFP23560 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC27.33■■□□□ 1.97
BDNFP23560 ABCB10P1-201ENST00000614297 2181 ntBASIC27.32■■□□□ 1.96
BDNFP23560 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
BDNFP23560 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC27.32■■□□□ 1.96
BDNFP23560 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC27.32■■□□□ 1.96
BDNFP23560 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
BDNFP23560 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
BDNFP23560 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC27.31■■□□□ 1.96
BDNFP23560 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
BDNFP23560 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
BDNFP23560 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
BDNFP23560 MIR639-201ENST00000384974 98 ntBASIC27.3■■□□□ 1.96
BDNFP23560 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
BDNFP23560 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
BDNFP23560 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
BDNFP23560 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
BDNFP23560 HES6-205ENST00000409356 528 ntTSL 2 BASIC27.27■■□□□ 1.96
BDNFP23560 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC27.26■■□□□ 1.95
BDNFP23560 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms