Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 NCAM1-221ENST00000615112 5967 ntAPPRIS P5 TSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 ZNF259P1-202ENST00000572422 4912 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 FLJ31356-202ENST00000445878 3001 ntTSL 4 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 SPIN3-211ENST00000638712 4286 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 NDE1-201ENST00000396354 3221 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC108215.1-201ENST00000624463 3226 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC022182.3-201ENST00000529239 2167 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 OPCML-207ENST00000541867 6277 ntTSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 OPCML-208ENST00000612177 6250 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 RNF185-202ENST00000326132 3171 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 EEF1A1P12-201ENST00000443590 1346 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 CAV1-201ENST00000341049 2704 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 U91328.2-201ENST00000606723 4130 ntTSL 2 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 ACTR3C-206ENST00000613959 5142 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 LEKR1-204ENST00000470811 2881 ntTSL 2 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AP000350.7-201ENST00000624923 8030 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 LRRC4-201ENST00000249363 3828 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 OR4D1-201ENST00000268912 1024 ntAPPRIS P1 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 TAAR2-201ENST00000275191 1157 ntAPPRIS P3 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 VNN3-201ENST00000275223 1260 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 Y_RNA.192-201ENST00000363977 102 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 Y_RNA.356-201ENST00000365475 113 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AL136968.2-201ENST00000407959 354 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 AL596451.1-201ENST00000419824 572 ntTSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 LINC00665-202ENST00000427868 690 ntTSL 3 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AL139327.3-201ENST00000433721 379 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC097358.1-201ENST00000438827 582 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 RPSA-202ENST00000443003 1032 ntAPPRIS ALT1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 MTCYBP42-201ENST00000444653 1130 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 CD59-206ENST00000445143 825 ntAPPRIS P2 TSL 3 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 SEPT14P24-201ENST00000447236 180 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AL035660.2-201ENST00000461248 556 ntTSL 2 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC018475.1-201ENST00000478358 465 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 RN7SL282P-201ENST00000479676 297 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 CLEC7A-208ENST00000525605 573 ntTSL 4 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 MUCL1-202ENST00000546809 439 ntAPPRIS ALT2 TSL 3 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 EIF4A1P4-201ENST00000550578 1213 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 ELK3-206ENST00000552142 1242 ntTSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AL358332.1-201ENST00000555649 813 ntTSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 EIF4EBP2P2-201ENST00000563883 333 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 RN7SL786P-201ENST00000579130 298 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC018714.1-201ENST00000605028 208 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 RNU6ATAC35P-201ENST00000609276 444 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC010542.5-201ENST00000612427 382 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC010538.1-201ENST00000615131 663 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 RN7SL113P-201ENST00000619959 299 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 RN7SL575P-201ENST00000620774 299 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 METAP2-202ENST00000323666 3601 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 KCNK10-203ENST00000340700 7501 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC008870.1-201ENST00000566996 3009 ntTSL 2 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 ATP9B-202ENST00000426216 4361 ntTSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 SMIM8-201ENST00000229570 2405 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 USP15-202ENST00000312635 2226 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 LINC01232-204ENST00000626729 2796 ntTSL 2 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC005005.3-201ENST00000609017 1410 ntBASIC9.37□□□□□ -0.91
LRCH3Q96II8 CD163L1-202ENST00000416109 4603 ntAPPRIS ALT2 TSL 2 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 TRIM55-201ENST00000276573 1960 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 TULP3-201ENST00000397132 1951 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 CELF2-205ENST00000542579 7982 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 CLTCL1-211ENST00000621271 5313 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 PCDH11Y-202ENST00000333703 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 SLC25A16-207ENST00000609923 6529 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
LRCH3Q96II8 NFIA-206ENST00000371191 1916 ntTSL 5 BASIC9.37□□□□□ -0.91
LRCH3Q96II8 AC016582.1-201ENST00000592640 1716 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
LRCH3Q96II8 ZMYND8-204ENST00000355972 5542 ntAPPRIS ALT2 TSL 2 BASIC9.36□□□□□ -0.91
LRCH3Q96II8 GNPAT-201ENST00000366647 2643 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
LRCH3Q96II8 DCLK1-202ENST00000360631 8007 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
LRCH3Q96II8 SYT14-202ENST00000367019 2997 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
LRCH3Q96II8 TXLNB-201ENST00000358430 4753 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LRCH3Q96II8 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
LRCH3Q96II8 SLC19A3-201ENST00000258403 3105 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LRCH3Q96II8 CDC27-204ENST00000527547 2579 ntAPPRIS ALT1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LRCH3Q96II8 AL512310.3-201ENST00000547023 1335 ntBASIC9.36□□□□□ -0.91
LRCH3Q96II8 AL929601.4-201ENST00000613011 1341 ntBASIC9.36□□□□□ -0.91
LRCH3Q96II8 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC9.36□□□□□ -0.91
LRCH3Q96II8 GLRA3-202ENST00000340217 3065 ntAPPRIS ALT1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LRCH3Q96II8 DDX52-213ENST00000617633 6362 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LRCH3Q96II8 PCDHGA5-202ENST00000611914 3552 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
LRCH3Q96II8 NANOGP1-202ENST00000607111 1982 ntTSL 5 BASIC9.36□□□□□ -0.91
LRCH3Q96II8 GLYATL2-201ENST00000287275 1640 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
LRCH3Q96II8 SLAMF7-204ENST00000441662 2497 ntAPPRIS ALT2 TSL 2 BASIC9.36□□□□□ -0.91
LRCH3Q96II8 SPATA19-201ENST00000299140 861 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms