Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC055716.2-201ENST00000552545 2441 ntBASIC7.93□□□□□ -1.14
MSX1P28360 TBCK-203ENST00000394706 3349 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 SRL-201ENST00000399609 4214 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 KIF1B-202ENST00000377081 8746 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 CASP8-205ENST00000358485 2930 ntAPPRIS ALT2 TSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 SORL1-204ENST00000525532 3836 ntTSL 2 BASIC7.93□□□□□ -1.14
MSX1P28360 SH2D4B-202ENST00000339284 3983 ntAPPRIS P1 TSL 2 BASIC7.93□□□□□ -1.14
MSX1P28360 AL449403.2-201ENST00000624497 2662 ntTSL 2 BASIC7.93□□□□□ -1.14
MSX1P28360 ZNF107-204ENST00000423627 5773 ntTSL 5 BASIC7.93□□□□□ -1.14
MSX1P28360 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC7.93□□□□□ -1.14
MSX1P28360 RNA5SP426-201ENST00000362901 121 ntBASIC7.93□□□□□ -1.14
MSX1P28360 OR2T4-201ENST00000366473 963 ntAPPRIS P1 BASIC7.93□□□□□ -1.14
MSX1P28360 OR2T4-202ENST00000366475 1047 ntBASIC7.93□□□□□ -1.14
MSX1P28360 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC7.93□□□□□ -1.14
MSX1P28360 CBWD1-207ENST00000382447 1241 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 FCRL6-204ENST00000392235 947 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 YWHAZP4-201ENST00000392459 708 ntBASIC7.93□□□□□ -1.14
MSX1P28360 MAGEC3-202ENST00000409007 1290 ntAPPRIS ALT2 TSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 AC004009.1-201ENST00000412413 567 ntTSL 5 BASIC7.93□□□□□ -1.14
MSX1P28360 AC244157.1-201ENST00000415642 163 ntBASIC7.93□□□□□ -1.14
MSX1P28360 AC007359.1-201ENST00000417910 745 ntTSL 3 BASIC7.93□□□□□ -1.14
MSX1P28360 Z99497.1-201ENST00000421282 135 ntBASIC7.93□□□□□ -1.14
MSX1P28360 CLIC4P3-201ENST00000422221 752 ntBASIC7.93□□□□□ -1.14
MSX1P28360 AL139220.2-213ENST00000431800 674 ntTSL 3 BASIC7.93□□□□□ -1.14
MSX1P28360 AL590094.1-203ENST00000435649 828 ntTSL 5 BASIC7.93□□□□□ -1.14
MSX1P28360 TRIM60P8Y-201ENST00000436338 762 ntBASIC7.93□□□□□ -1.14
MSX1P28360 LINC01762-205ENST00000437308 539 ntTSL 3 BASIC7.93□□□□□ -1.14
MSX1P28360 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC7.93□□□□□ -1.14
MSX1P28360 AC008175.1-202ENST00000439653 745 ntTSL 3 BASIC7.93□□□□□ -1.14
MSX1P28360 MTCO3P18-201ENST00000440206 761 ntBASIC7.93□□□□□ -1.14
MSX1P28360 AL158829.1-201ENST00000449258 478 ntTSL 3 BASIC7.93□□□□□ -1.14
MSX1P28360 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC7.93□□□□□ -1.14
MSX1P28360 LINC01706-201ENST00000455299 748 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 DAP3-209ENST00000465375 729 ntTSL 2 BASIC7.93□□□□□ -1.14
MSX1P28360 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 AC068531.1-201ENST00000502398 195 ntBASIC7.93□□□□□ -1.14
MSX1P28360 AC093821.1-201ENST00000503950 539 ntTSL 4 BASIC7.93□□□□□ -1.14
MSX1P28360 HSPD1P18-201ENST00000504252 244 ntBASIC7.93□□□□□ -1.14
MSX1P28360 AC104063.1-201ENST00000504840 702 ntTSL 3 BASIC7.93□□□□□ -1.14
MSX1P28360 LINC01411-204ENST00000510234 938 ntTSL 3 BASIC7.93□□□□□ -1.14
MSX1P28360 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC7.93□□□□□ -1.14
MSX1P28360 HNRNPKP5-201ENST00000515300 253 ntBASIC7.93□□□□□ -1.14
MSX1P28360 RNU6-507P-201ENST00000516045 100 ntBASIC7.93□□□□□ -1.14
MSX1P28360 RNU6-506P-201ENST00000516553 94 ntBASIC7.93□□□□□ -1.14
MSX1P28360 AC023078.5-201ENST00000528646 707 ntTSL 3 BASIC7.93□□□□□ -1.14
MSX1P28360 RASSF8-AS1-204ENST00000535436 1121 ntTSL 4 BASIC7.93□□□□□ -1.14
MSX1P28360 AC019209.3-201ENST00000536949 772 ntTSL 3 BASIC7.93□□□□□ -1.14
MSX1P28360 AP000820.1-201ENST00000545912 506 ntTSL 3 BASIC7.93□□□□□ -1.14
MSX1P28360 AC091147.1-201ENST00000583290 510 ntBASIC7.93□□□□□ -1.14
MSX1P28360 PRKAR1A-214ENST00000588188 1209 ntTSL 3 BASIC7.93□□□□□ -1.14
MSX1P28360 AC005261.1-201ENST00000601567 712 ntTSL 2 BASIC7.93□□□□□ -1.14
MSX1P28360 AC024451.4-201ENST00000602578 752 ntBASIC7.93□□□□□ -1.14
MSX1P28360 AP004372.1-201ENST00000604842 844 ntBASIC7.93□□□□□ -1.14
MSX1P28360 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC7.93□□□□□ -1.14
MSX1P28360 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC7.93□□□□□ -1.14
MSX1P28360 AC097505.1-201ENST00000610199 565 ntBASIC7.93□□□□□ -1.14
MSX1P28360 AC023310.4-201ENST00000613130 650 ntBASIC7.93□□□□□ -1.14
MSX1P28360 DRICH1-202ENST00000614553 687 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 uc_338.33-201ENST00000614988 170 ntBASIC7.93□□□□□ -1.14
MSX1P28360 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC7.93□□□□□ -1.14
MSX1P28360 AC006449.1-201ENST00000616263 571 ntTSL 4 BASIC7.93□□□□□ -1.14
MSX1P28360 AC010332.1-201ENST00000620439 97 ntBASIC7.93□□□□□ -1.14
MSX1P28360 AL136038.5-201ENST00000620835 554 ntBASIC7.93□□□□□ -1.14
MSX1P28360 DUXAP9-208ENST00000622815 614 ntBASIC7.93□□□□□ -1.14
MSX1P28360 KATNAL2-201ENST00000245121 2833 ntAPPRIS P2 TSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 AZIN1-202ENST00000347770 2857 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 RSU1-203ENST00000377921 3919 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 NCAPH-202ENST00000427946 2363 ntTSL 2 BASIC7.93□□□□□ -1.14
MSX1P28360 AC245060.6-201ENST00000624350 8420 ntBASIC7.93□□□□□ -1.14
MSX1P28360 RORA-202ENST00000309157 1908 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 DHRS9-201ENST00000357546 1917 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 AL049839.2-201ENST00000553947 3067 ntAPPRIS P1 TSL 2 BASIC7.93□□□□□ -1.14
MSX1P28360 AC124045.1-201ENST00000606008 1953 ntBASIC7.93□□□□□ -1.14
MSX1P28360 AC124319.2-201ENST00000575034 3651 ntTSL 2 BASIC7.93□□□□□ -1.14
MSX1P28360 EEF1A1P4-201ENST00000359165 1405 ntBASIC7.93□□□□□ -1.14
MSX1P28360 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC7.93□□□□□ -1.14
MSX1P28360 PPARG-209ENST00000397026 2029 ntTSL 5 BASIC7.93□□□□□ -1.14
MSX1P28360 VWA5A-205ENST00000456829 4388 ntAPPRIS P4 TSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 SLC5A1-201ENST00000266088 5061 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
MSX1P28360 CNTN4-202ENST00000397461 5198 ntAPPRIS P1 TSL 5 BASIC7.93□□□□□ -1.14
MSX1P28360 R3HDM2-207ENST00000441731 4076 ntTSL 5 BASIC7.93□□□□□ -1.14
MSX1P28360 CARF-216ENST00000444724 2854 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 AL121722.1-201ENST00000638550 4849 ntAPPRIS P1 TSL 5 BASIC7.92□□□□□ -1.14
MSX1P28360 HPS4-203ENST00000402105 3562 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 PATE2-201ENST00000358524 1657 ntAPPRIS P2 TSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 AP000776.1-201ENST00000530032 1663 ntBASIC7.92□□□□□ -1.14
MSX1P28360 USP3-208ENST00000558285 1742 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 SERPIND1-201ENST00000215727 2437 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 WDR19-201ENST00000399820 4520 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 AC025569.1-202ENST00000548687 5903 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 CACNA1D-202ENST00000350061 7636 ntAPPRIS ALT2 TSL 1 (best) BASIC7.92□□□□□ -1.14
MSX1P28360 ZBTB14-207ENST00000614697 3341 ntAPPRIS P1 TSL 2 BASIC7.92□□□□□ -1.14
MSX1P28360 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC7.92□□□□□ -1.14
MSX1P28360 AC004148.2-201ENST00000575890 1938 ntTSL 5 BASIC7.92□□□□□ -1.14
MSX1P28360 ZNF343-201ENST00000278772 3632 ntAPPRIS P3 TSL 2 BASIC7.92□□□□□ -1.14
MSX1P28360 PRYP4-201ENST00000306589 444 ntBASIC7.92□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms