Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AC023983.2-201ENST00000608010 562 ntBASIC9.39□□□□□ -0.91
LRCH3Q96II8 MGST2-207ENST00000616265 1278 ntAPPRIS P1 TSL 4 BASIC9.39□□□□□ -0.91
LRCH3Q96II8 AL607023.1-201ENST00000620045 248 ntBASIC9.39□□□□□ -0.91
LRCH3Q96II8 AL136038.5-201ENST00000620835 554 ntBASIC9.39□□□□□ -0.91
LRCH3Q96II8 AC090574.1-201ENST00000623186 233 ntBASIC9.39□□□□□ -0.91
LRCH3Q96II8 AC135068.5-201ENST00000624197 983 ntBASIC9.39□□□□□ -0.91
LRCH3Q96II8 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC9.39□□□□□ -0.91
LRCH3Q96II8 R3HDM2-207ENST00000441731 4076 ntTSL 5 BASIC9.39□□□□□ -0.91
LRCH3Q96II8 GGA3-202ENST00000538886 3766 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LRCH3Q96II8 ADAMTS12-203ENST00000504830 8774 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
LRCH3Q96II8 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
LRCH3Q96II8 PPP2R1B-201ENST00000311129 2082 ntAPPRIS P4 TSL 1 (best) BASIC9.39□□□□□ -0.91
LRCH3Q96II8 NOTCH2NL-203ENST00000578207 5042 ntAPPRIS P2 TSL 5 BASIC9.39□□□□□ -0.91
LRCH3Q96II8 LHX9-203ENST00000367390 7413 ntAPPRIS ALT1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LRCH3Q96II8 AC108058.1-201ENST00000457290 2044 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LRCH3Q96II8 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LRCH3Q96II8 AC079174.2-201ENST00000611145 2028 ntBASIC9.39□□□□□ -0.91
LRCH3Q96II8 SMARCAL1-202ENST00000358207 3056 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
LRCH3Q96II8 ACTR2-201ENST00000260641 3861 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LRCH3Q96II8 CALCOCO1-210ENST00000548263 3888 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LRCH3Q96II8 TIMP2-203ENST00000585421 3345 ntTSL 3 BASIC9.39□□□□□ -0.91
LRCH3Q96II8 TAOK1-201ENST00000261716 12407 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LRCH3Q96II8 AC125238.2-201ENST00000430003 1440 ntBASIC9.39□□□□□ -0.91
LRCH3Q96II8 NOL11-201ENST00000253247 2947 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LRCH3Q96II8 RP1-206ENST00000636932 3649 ntTSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 RHPN2-201ENST00000254260 3500 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LRCH3Q96II8 CTH-203ENST00000411986 2044 ntTSL 2 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 PAX6-273ENST00000640610 2730 ntAPPRIS ALT1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LRCH3Q96II8 ESRRG-207ENST00000366940 5314 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LRCH3Q96II8 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
LRCH3Q96II8 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 AC090181.3-201ENST00000624777 1514 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 UPP2-201ENST00000005756 2224 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LRCH3Q96II8 RNU6-348P-201ENST00000384386 107 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 RNU6-1005P-201ENST00000384519 107 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 AL079342.2-201ENST00000403367 482 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 C1D-203ENST00000409302 772 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 AC013403.1-201ENST00000436954 263 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 AC016908.1-201ENST00000442571 1219 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 AC074257.1-201ENST00000446340 585 ntTSL 4 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 OR4A47-201ENST00000446524 1064 ntAPPRIS P1 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 YRDCP3-201ENST00000456507 480 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 ENPP7P2-201ENST00000462675 943 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 LINC00881-201ENST00000467995 589 ntTSL 4 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 RPL5P15-201ENST00000475870 897 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 AC006387.1-203ENST00000494849 342 ntTSL 3 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 RNF138P1-201ENST00000502765 546 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 AC093821.1-201ENST00000503950 539 ntTSL 4 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 HPRT1P2-201ENST00000505250 544 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 AC104090.1-201ENST00000506341 1171 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 NPIPA3-201ENST00000526520 954 ntTSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 LINC01499-201ENST00000528720 553 ntTSL 4 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 NPIPA2-201ENST00000529166 1110 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 NPIPA2-202ENST00000530328 954 ntTSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 NPIPA3-202ENST00000531598 1155 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 NPIPA5-202ENST00000534094 954 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 AC004817.1-201ENST00000553621 721 ntTSL 4 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 AL807752.5-201ENST00000569497 820 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 AC007785.1-201ENST00000597989 332 ntTSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 ZNF559-ZNF177-205ENST00000602856 419 ntTSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 AL512430.4-201ENST00000603085 613 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 AC015871.2-201ENST00000603605 948 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 AL590705.1-201ENST00000607322 484 ntTSL 4 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 OR6L2P-201ENST00000608207 925 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 Metazoa_SRP.71-201ENST00000612122 282 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 AC123788.2-201ENST00000612290 283 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 AL365204.3-201ENST00000612448 685 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 AC244196.3-201ENST00000614171 374 ntAPPRIS P1 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 PDZK1P1-203ENST00000616036 577 ntTSL 4 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 RMST_10.1-201ENST00000616309 154 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 AC008121.3-201ENST00000618726 433 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 ZNF195-203ENST00000343338 3145 ntAPPRIS ALT2 TSL 4 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 BSN-201ENST00000296452 15955 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LRCH3Q96II8 NEPRO-202ENST00000383675 4672 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LRCH3Q96II8 SYT1-202ENST00000393240 3095 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
LRCH3Q96II8 ZNF442-201ENST00000242804 6219 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 EYA1-204ENST00000388741 3404 ntTSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 MOSPD2-204ENST00000482354 1870 ntTSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 EEF1A1P4-201ENST00000359165 1405 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 STEAP2-206ENST00000394632 2072 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
LRCH3Q96II8 NTRK3-220ENST00000626019 2741 ntTSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 OPCML-201ENST00000331898 6833 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LRCH3Q96II8 AP000641.1-201ENST00000531988 1639 ntBASIC9.38□□□□□ -0.91
LRCH3Q96II8 CU633967.1-204ENST00000624627 1604 ntTSL 2 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 CEP85-209ENST00000640292 2286 ntAPPRIS ALT1 TSL 5 BASIC9.38□□□□□ -0.91
LRCH3Q96II8 SNX13-203ENST00000428135 6357 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LRCH3Q96II8 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
LRCH3Q96II8 SPDYE10P-201ENST00000576332 2021 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms