Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RGS7-201ENST00000348120 1980 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CUX1P39880 GRIK2-202ENST00000358361 1981 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CUX1P39880 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC11.42□□□□□ -0.58
CUX1P39880 VPS13D-212ENST00000543766 3838 ntTSL 2 BASIC11.42□□□□□ -0.58
CUX1P39880 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CUX1P39880 ZNF791-201ENST00000343325 4554 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CUX1P39880 EYA4-203ENST00000367895 5699 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
CUX1P39880 NUDCD2-201ENST00000302764 8005 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CUX1P39880 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CUX1P39880 AC004870.2-202ENST00000423781 706 ntTSL 3 BASIC11.41□□□□□ -0.58
CUX1P39880 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC11.41□□□□□ -0.58
CUX1P39880 HMGN1P6-201ENST00000438508 291 ntBASIC11.41□□□□□ -0.58
CUX1P39880 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC11.41□□□□□ -0.58
CUX1P39880 RPL24-206ENST00000495401 478 ntTSL 2 BASIC11.41□□□□□ -0.58
CUX1P39880 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CUX1P39880 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC11.41□□□□□ -0.58
CUX1P39880 AC008691.1-209ENST00000642094 814 ntBASIC11.41□□□□□ -0.58
CUX1P39880 AC007066.2-201ENST00000561961 1993 ntTSL 2 BASIC11.41□□□□□ -0.58
CUX1P39880 NCKAP5-201ENST00000317721 7593 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
CUX1P39880 NCKAP5-205ENST00000409261 7594 ntAPPRIS P4 TSL 5 BASIC11.41□□□□□ -0.58
CUX1P39880 MR1-208ENST00000614012 7860 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
CUX1P39880 RFT1-201ENST00000296292 5108 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CUX1P39880 DUBR-202ENST00000466734 2737 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CUX1P39880 GPR63-201ENST00000229955 5952 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CUX1P39880 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CUX1P39880 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC11.4□□□□□ -0.58
CUX1P39880 CD163-202ENST00000396620 3800 ntAPPRIS ALT2 TSL 2 BASIC11.4□□□□□ -0.58
CUX1P39880 AC009500.1-201ENST00000420684 583 ntBASIC11.4□□□□□ -0.58
CUX1P39880 FAM96B-201ENST00000422424 676 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CUX1P39880 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC11.4□□□□□ -0.58
CUX1P39880 OR4A21P-201ENST00000532759 944 ntBASIC11.4□□□□□ -0.58
CUX1P39880 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC11.4□□□□□ -0.58
CUX1P39880 OR8D2-201ENST00000624618 1051 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
CUX1P39880 DDX10-203ENST00000526794 6707 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CUX1P39880 GALR1-201ENST00000299727 10044 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CUX1P39880 LINC01568-201ENST00000554640 2544 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CUX1P39880 AC016251.1-201ENST00000624299 4198 ntBASIC11.4□□□□□ -0.58
CUX1P39880 PDPR-201ENST00000288050 9255 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CUX1P39880 AL031594.1-201ENST00000417123 1932 ntTSL 2 BASIC11.4□□□□□ -0.58
CUX1P39880 BRD7P1-201ENST00000557705 1915 ntBASIC11.4□□□□□ -0.58
CUX1P39880 DAAM1-201ENST00000360909 4227 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
CUX1P39880 AC009264.1-207ENST00000425981 1538 ntTSL 2 BASIC11.4□□□□□ -0.58
CUX1P39880 RACGAP1P-201ENST00000550663 1879 ntBASIC11.4□□□□□ -0.58
CUX1P39880 ZNF200-203ENST00000396871 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
CUX1P39880 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CUX1P39880 MYH2-201ENST00000245503 6339 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CUX1P39880 NPIPB6-201ENST00000532254 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
CUX1P39880 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC11.4□□□□□ -0.59
CUX1P39880 FAM122C-201ENST00000370784 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
CUX1P39880 DOCK1-206ENST00000623213 5761 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
CUX1P39880 SLFN11-202ENST00000394566 5030 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.59
CUX1P39880 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC11.4□□□□□ -0.59
CUX1P39880 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC11.4□□□□□ -0.59
CUX1P39880 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
CUX1P39880 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC11.4□□□□□ -0.59
CUX1P39880 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC11.4□□□□□ -0.59
CUX1P39880 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC11.4□□□□□ -0.59
CUX1P39880 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
CUX1P39880 ANP32BP1-202ENST00000568553 737 ntBASIC11.4□□□□□ -0.59
CUX1P39880 OR4M2-201ENST00000614722 1133 ntAPPRIS P1 BASIC11.4□□□□□ -0.59
CUX1P39880 AL357140.4-201ENST00000636827 412 ntBASIC11.4□□□□□ -0.59
CUX1P39880 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC11.4□□□□□ -0.59
CUX1P39880 LINC00184-201ENST00000429269 2270 ntTSL 2 BASIC11.4□□□□□ -0.59
CUX1P39880 ACVR2A-207ENST00000535787 5166 ntTSL 2 BASIC11.4□□□□□ -0.59
CUX1P39880 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC11.39□□□□□ -0.59
CUX1P39880 PHACTR1-205ENST00000379350 4784 ntTSL 2 BASIC11.39□□□□□ -0.59
CUX1P39880 JAKMIP2-206ENST00000616793 9272 ntAPPRIS ALT1 TSL 5 BASIC11.39□□□□□ -0.59
CUX1P39880 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC11.39□□□□□ -0.59
CUX1P39880 DDX43P1-201ENST00000510713 1763 ntBASIC11.39□□□□□ -0.59
CUX1P39880 POU2F3-201ENST00000260264 2903 ntTSL 2 BASIC11.39□□□□□ -0.59
CUX1P39880 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CUX1P39880 THADA-206ENST00000405006 6310 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CUX1P39880 BVES-AS1-202ENST00000369122 1716 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CUX1P39880 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CUX1P39880 ZNF610-207ENST00000601151 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
CUX1P39880 IGKV1OR2-3-201ENST00000411475 288 ntBASIC11.39□□□□□ -0.59
CUX1P39880 AL121916.1-201ENST00000429405 308 ntBASIC11.39□□□□□ -0.59
CUX1P39880 H3F3AP3-201ENST00000497682 407 ntBASIC11.39□□□□□ -0.59
CUX1P39880 ZNF519P4-201ENST00000514008 125 ntBASIC11.39□□□□□ -0.59
CUX1P39880 SCARNA5-201ENST00000516201 276 ntBASIC11.39□□□□□ -0.59
CUX1P39880 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC11.39□□□□□ -0.59
CUX1P39880 MYOM1-203ENST00000400569 4927 ntTSL 5 BASIC11.39□□□□□ -0.59
CUX1P39880 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC11.39□□□□□ -0.59
CUX1P39880 AC020978.6-201ENST00000571197 3177 ntBASIC11.39□□□□□ -0.59
CUX1P39880 MYOM1-201ENST00000261606 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
CUX1P39880 AMOT-204ENST00000371962 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
CUX1P39880 ATXN3-203ENST00000393287 6770 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CUX1P39880 AKAP17BP-201ENST00000431706 2719 ntBASIC11.38□□□□□ -0.59
CUX1P39880 UNC79-205ENST00000555664 8484 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
CUX1P39880 NBAS-201ENST00000281513 7281 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CUX1P39880 ZNF667-206ENST00000591790 5250 ntTSL 2 BASIC11.38□□□□□ -0.59
CUX1P39880 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
CUX1P39880 STK32B-207ENST00000512636 3272 ntTSL 5 BASIC11.38□□□□□ -0.59
CUX1P39880 XRCC6P4-201ENST00000518193 2067 ntBASIC11.38□□□□□ -0.59
CUX1P39880 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CUX1P39880 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CUX1P39880 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC11.38□□□□□ -0.59
CUX1P39880 YWHAZP4-201ENST00000392459 708 ntBASIC11.38□□□□□ -0.59
CUX1P39880 DHFRP2-201ENST00000414224 547 ntBASIC11.38□□□□□ -0.59
CUX1P39880 KRTAP3-4P-201ENST00000430780 280 ntBASIC11.38□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms