Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 UAP1-202ENST00000367924 2066 ntAPPRIS ALT1 TSL 5 BASIC7.97□□□□□ -1.13
MSX1P28360 AL161636.1-201ENST00000427145 2254 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 MAPK10-316ENST00000641430 2285 ntBASIC7.97□□□□□ -1.13
MSX1P28360 NHLRC3-201ENST00000379599 3275 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 MARK3-203ENST00000335102 2331 ntTSL 5 BASIC7.97□□□□□ -1.13
MSX1P28360 TUBA1A-202ENST00000301071 1915 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 CEACAM20-202ENST00000614577 1530 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 SERPINA9-203ENST00000380365 1333 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.13
MSX1P28360 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC7.97□□□□□ -1.13
MSX1P28360 UNC79-201ENST00000256339 8400 ntAPPRIS P2 TSL 5 BASIC7.97□□□□□ -1.13
MSX1P28360 LINC00486-201ENST00000414054 1794 ntTSL 4 BASIC7.97□□□□□ -1.13
MSX1P28360 STK32B-207ENST00000512636 3272 ntTSL 5 BASIC7.97□□□□□ -1.13
MSX1P28360 CLIC5-201ENST00000185206 6023 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
MSX1P28360 OFD1P15Y-201ENST00000411536 1392 ntBASIC7.97□□□□□ -1.13
MSX1P28360 NNT-AS1-204ENST00000513560 4769 ntTSL 2 BASIC7.97□□□□□ -1.13
MSX1P28360 NUP93-210ENST00000564887 2875 ntTSL 2 BASIC7.96□□□□□ -1.13
MSX1P28360 HSPA9P1-201ENST00000432228 2029 ntBASIC7.96□□□□□ -1.13
MSX1P28360 FBXO38-202ENST00000340253 4424 ntAPPRIS P1 TSL 5 BASIC7.96□□□□□ -1.13
MSX1P28360 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC7.96□□□□□ -1.13
MSX1P28360 ABCC5-205ENST00000427120 4697 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
MSX1P28360 FAM9C-201ENST00000333995 3361 ntAPPRIS P2 TSL 1 (best) BASIC7.96□□□□□ -1.13
MSX1P28360 PDLIM5-201ENST00000317968 6083 ntAPPRIS P3 TSL 1 (best) BASIC7.96□□□□□ -1.13
MSX1P28360 EYA1-201ENST00000303824 3930 ntAPPRIS ALT1 TSL 2 BASIC7.96□□□□□ -1.13
MSX1P28360 ZMYND8-212ENST00000458360 3729 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.13
MSX1P28360 AC019155.2-201ENST00000420224 1918 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
MSX1P28360 FDFT1-212ENST00000528643 1909 ntTSL 2 BASIC7.96□□□□□ -1.13
MSX1P28360 DYNLRB1-201ENST00000300469 1464 ntTSL 5 BASIC7.96□□□□□ -1.13
MSX1P28360 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC7.96□□□□□ -1.13
MSX1P28360 ACER3-212ENST00000532485 7378 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
MSX1P28360 CTNND1-206ENST00000415361 5832 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 CTNND1-225ENST00000530094 5814 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 KANSL2-201ENST00000420613 2155 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 OR14I1-201ENST00000342623 936 ntAPPRIS P1 BASIC7.96□□□□□ -1.14
MSX1P28360 GAGE2A-201ENST00000362097 528 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 RN7SKP25-201ENST00000362449 308 ntBASIC7.96□□□□□ -1.14
MSX1P28360 RNU6-181P-201ENST00000363225 107 ntBASIC7.96□□□□□ -1.14
MSX1P28360 RN7SKP10-201ENST00000364291 325 ntBASIC7.96□□□□□ -1.14
MSX1P28360 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC7.96□□□□□ -1.14
MSX1P28360 GLS-205ENST00000409626 997 ntTSL 2 BASIC7.96□□□□□ -1.14
MSX1P28360 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 SLC25A5P2-201ENST00000413713 897 ntBASIC7.96□□□□□ -1.14
MSX1P28360 RMDN2-AS1-201ENST00000414365 859 ntTSL 4 BASIC7.96□□□□□ -1.14
MSX1P28360 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC7.96□□□□□ -1.14
MSX1P28360 NONOP2-201ENST00000414613 1231 ntBASIC7.96□□□□□ -1.14
MSX1P28360 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC7.96□□□□□ -1.14
MSX1P28360 AL162595.2-201ENST00000430677 792 ntTSL 3 BASIC7.96□□□□□ -1.14
MSX1P28360 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC7.96□□□□□ -1.14
MSX1P28360 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC7.96□□□□□ -1.14
MSX1P28360 HSD3BP5-201ENST00000434856 1132 ntBASIC7.96□□□□□ -1.14
MSX1P28360 LARP1BP3-201ENST00000437229 869 ntBASIC7.96□□□□□ -1.14
MSX1P28360 AL773572.1-202ENST00000440221 1004 ntTSL 3 BASIC7.96□□□□□ -1.14
MSX1P28360 TISP43-205ENST00000440359 543 ntAPPRIS ALT2 TSL 5 BASIC7.96□□□□□ -1.14
MSX1P28360 MTND1P30-201ENST00000441241 901 ntBASIC7.96□□□□□ -1.14
MSX1P28360 MTND3P1-201ENST00000441336 220 ntBASIC7.96□□□□□ -1.14
MSX1P28360 RPL21P33-201ENST00000444831 484 ntBASIC7.96□□□□□ -1.14
MSX1P28360 RPL5P10-201ENST00000445207 894 ntBASIC7.96□□□□□ -1.14
MSX1P28360 ST13P20-201ENST00000447996 1065 ntBASIC7.96□□□□□ -1.14
MSX1P28360 AC013264.1-201ENST00000449346 455 ntTSL 2 BASIC7.96□□□□□ -1.14
MSX1P28360 LINC01647-201ENST00000453135 1285 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 KATNBL1P6-201ENST00000453433 915 ntBASIC7.96□□□□□ -1.14
MSX1P28360 OSBPL10-AS1-207ENST00000455961 411 ntTSL 2 BASIC7.96□□□□□ -1.14
MSX1P28360 AC004448.4-203ENST00000456537 441 ntTSL 3 BASIC7.96□□□□□ -1.14
MSX1P28360 AC236972.4-201ENST00000458091 963 ntBASIC7.96□□□□□ -1.14
MSX1P28360 CCDC75P1-201ENST00000469247 791 ntBASIC7.96□□□□□ -1.14
MSX1P28360 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC7.96□□□□□ -1.14
MSX1P28360 UCK2-206ENST00000470820 1083 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 RN7SL448P-201ENST00000475566 295 ntBASIC7.96□□□□□ -1.14
MSX1P28360 AC037198.2-201ENST00000478845 733 ntBASIC7.96□□□□□ -1.14
MSX1P28360 RPL34P29-201ENST00000491411 325 ntBASIC7.96□□□□□ -1.14
MSX1P28360 SUMO1P1-201ENST00000497904 306 ntBASIC7.96□□□□□ -1.14
MSX1P28360 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC7.96□□□□□ -1.14
MSX1P28360 AC091874.2-201ENST00000505889 720 ntBASIC7.96□□□□□ -1.14
MSX1P28360 AC114786.3-201ENST00000509304 705 ntBASIC7.96□□□□□ -1.14
MSX1P28360 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC7.96□□□□□ -1.14
MSX1P28360 RNU6-678P-201ENST00000516832 109 ntBASIC7.96□□□□□ -1.14
MSX1P28360 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC7.96□□□□□ -1.14
MSX1P28360 AC008632.1-201ENST00000519400 753 ntTSL 3 BASIC7.96□□□□□ -1.14
MSX1P28360 IGKV2D-18-201ENST00000519785 375 ntBASIC7.96□□□□□ -1.14
MSX1P28360 AC015468.1-201ENST00000523852 874 ntTSL 3 BASIC7.96□□□□□ -1.14
MSX1P28360 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC7.96□□□□□ -1.14
MSX1P28360 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC7.96□□□□□ -1.14
MSX1P28360 RAB11AP2-201ENST00000545905 639 ntBASIC7.96□□□□□ -1.14
MSX1P28360 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC7.96□□□□□ -1.14
MSX1P28360 AC127029.1-201ENST00000560822 237 ntBASIC7.96□□□□□ -1.14
MSX1P28360 NUTF2P6-201ENST00000560892 385 ntBASIC7.96□□□□□ -1.14
MSX1P28360 AC012186.1-201ENST00000566702 398 ntBASIC7.96□□□□□ -1.14
MSX1P28360 AC090774.3-201ENST00000578666 742 ntBASIC7.96□□□□□ -1.14
MSX1P28360 AC005828.5-201ENST00000582741 355 ntTSL 4 BASIC7.96□□□□□ -1.14
MSX1P28360 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC7.96□□□□□ -1.14
MSX1P28360 AC104794.4-201ENST00000607181 446 ntBASIC7.96□□□□□ -1.14
MSX1P28360 AL592227.1-201ENST00000614748 126 ntBASIC7.96□□□□□ -1.14
MSX1P28360 AC007014.2-201ENST00000615581 479 ntBASIC7.96□□□□□ -1.14
MSX1P28360 GPC6-202ENST00000617456 792 ntTSL 3 BASIC7.96□□□□□ -1.14
MSX1P28360 ALG13-226ENST00000622986 582 ntTSL 2 BASIC7.96□□□□□ -1.14
MSX1P28360 LINC01206-219ENST00000625703 820 ntTSL 5 BASIC7.96□□□□□ -1.14
MSX1P28360 AL356599.1-202ENST00000626919 218 ntTSL 5 BASIC7.96□□□□□ -1.14
MSX1P28360 AC127502.3-201ENST00000636170 1206 ntBASIC7.96□□□□□ -1.14
MSX1P28360 LINC00604-202ENST00000637924 684 ntTSL 5 BASIC7.96□□□□□ -1.14
MSX1P28360 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC7.96□□□□□ -1.14
MSX1P28360 AC073869.7-201ENST00000640874 297 ntBASIC7.96□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms