Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CYP4F32P-201ENST00000426492 504 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC092164.1-203ENST00000444501 723 ntTSL 3 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC009970.1-201ENST00000444873 432 ntTSL 3 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 RN7SL251P-201ENST00000464175 297 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 RN7SL282P-201ENST00000479676 297 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC122710.2-201ENST00000506093 596 ntTSL 4 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC106774.2-201ENST00000510266 406 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC097460.2-201ENST00000511857 741 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC026700.1-201ENST00000512074 544 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC013643.2-201ENST00000521510 584 ntTSL 4 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 AP003385.2-201ENST00000524910 973 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 AP000880.1-201ENST00000529416 743 ntTSL 3 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 PPIAL4D-201ENST00000544708 495 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC067735.1-201ENST00000551152 526 ntTSL 2 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC009063.2-201ENST00000563981 906 ntTSL 3 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 PDCD6IPP2-205ENST00000565892 498 ntTSL 2 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 RN7SL25P-201ENST00000583862 260 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 BOLA2P1-201ENST00000584794 232 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 AP005131.5-201ENST00000585817 498 ntTSL 3 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 MIR205HG-210ENST00000603283 455 ntTSL 3 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC023513.1-201ENST00000604396 691 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 DUSP22-216ENST00000605863 551 ntTSL 4 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC097381.3-201ENST00000608962 462 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 AL022238.3-201ENST00000609279 443 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 uc_338.21-201ENST00000622458 147 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC005383.1-201ENST00000622689 534 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 AL353898.2-201ENST00000623000 255 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC110769.3-201ENST00000624567 1173 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC063952.4-201ENST00000634744 825 ntTSL 5 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
NKX3-1Q99801 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
NKX3-1Q99801 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 MR1-209ENST00000617803 7584 ntTSL 5 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 TFDP2-222ENST00000495310 1442 ntAPPRIS ALT2 TSL 2 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 ESRRG-221ENST00000493603 5304 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
NKX3-1Q99801 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
NKX3-1Q99801 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
NKX3-1Q99801 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
NKX3-1Q99801 NPIPB5-205ENST00000424340 3801 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
NKX3-1Q99801 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 WASF5P-205ENST00000428639 1455 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 USP9YP3-201ENST00000434481 1766 ntBASIC6.21□□□□□ -1.41
NKX3-1Q99801 ZNF658B-201ENST00000602828 3408 ntBASIC6.21□□□□□ -1.41
NKX3-1Q99801 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC6.21□□□□□ -1.41
NKX3-1Q99801 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
NKX3-1Q99801 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.41
NKX3-1Q99801 AC009264.1-207ENST00000425981 1538 ntTSL 2 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
NKX3-1Q99801 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 RGS7-201ENST00000348120 1980 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
NKX3-1Q99801 KLRG1-202ENST00000356986 1206 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
NKX3-1Q99801 FCAR-204ENST00000359272 828 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
NKX3-1Q99801 RPL23A-203ENST00000394938 688 ntTSL 2 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 GSTA6P-201ENST00000424144 582 ntBASIC6.21□□□□□ -1.42
NKX3-1Q99801 FDPSP1-201ENST00000424976 1071 ntBASIC6.21□□□□□ -1.42
NKX3-1Q99801 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 G6PC2-204ENST00000429379 645 ntTSL 2 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 EAF2-202ENST00000451944 960 ntTSL 2 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 CXCR6-203ENST00000457814 1184 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
NKX3-1Q99801 AC009269.1-201ENST00000470368 833 ntTSL 3 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 SMIM20-202ENST00000514384 774 ntTSL 5 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 GLYATL1P4-201ENST00000529326 906 ntBASIC6.21□□□□□ -1.42
NKX3-1Q99801 AC103968.1-201ENST00000557841 573 ntBASIC6.21□□□□□ -1.42
NKX3-1Q99801 AC044860.3-201ENST00000559957 368 ntBASIC6.21□□□□□ -1.42
NKX3-1Q99801 LINC00469-203ENST00000579749 583 ntTSL 5 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 TPGS2-204ENST00000587129 841 ntTSL 4 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 AC108451.2-201ENST00000603875 538 ntBASIC6.21□□□□□ -1.42
NKX3-1Q99801 IZUMO3-203ENST00000604921 743 ntAPPRIS P2 TSL 5 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 LINC00923-204ENST00000614972 1181 ntTSL 5 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 AC243830.2-201ENST00000618067 630 ntBASIC6.21□□□□□ -1.42
NKX3-1Q99801 CASC19-232ENST00000641480 1244 ntBASIC6.21□□□□□ -1.42
NKX3-1Q99801 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.42
NKX3-1Q99801 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
NKX3-1Q99801 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
NKX3-1Q99801 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.42
NKX3-1Q99801 BROX-209ENST00000612948 4028 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
NKX3-1Q99801 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
NKX3-1Q99801 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 MMACHC-203ENST00000616135 1510 ntTSL 2 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
NKX3-1Q99801 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
NKX3-1Q99801 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
NKX3-1Q99801 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AC009831.5-201ENST00000624000 3189 ntBASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms