Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC8.75□□□□□ -1.01
HMGB1P09429 AL392003.1-201ENST00000434394 243 ntBASIC8.75□□□□□ -1.01
HMGB1P09429 MRPS21P3-201ENST00000436696 262 ntBASIC8.75□□□□□ -1.01
HMGB1P09429 OR3B1P-201ENST00000437536 893 ntBASIC8.75□□□□□ -1.01
HMGB1P09429 AL031316.1-202ENST00000441672 449 ntTSL 3 BASIC8.75□□□□□ -1.01
HMGB1P09429 LINC01525-201ENST00000442182 511 ntTSL 2 BASIC8.75□□□□□ -1.01
HMGB1P09429 AC009970.1-201ENST00000444873 432 ntTSL 3 BASIC8.75□□□□□ -1.01
HMGB1P09429 HSD17B3-AS1-201ENST00000448857 1072 ntTSL 2 BASIC8.75□□□□□ -1.01
HMGB1P09429 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC8.75□□□□□ -1.01
HMGB1P09429 RPL34-204ENST00000502534 560 ntAPPRIS P1 TSL 4 BASIC8.75□□□□□ -1.01
HMGB1P09429 Z99943.2-201ENST00000507585 266 ntBASIC8.75□□□□□ -1.01
HMGB1P09429 AC114947.1-201ENST00000511991 432 ntTSL 2 BASIC8.75□□□□□ -1.01
HMGB1P09429 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC8.75□□□□□ -1.01
HMGB1P09429 AC132192.1-201ENST00000531111 597 ntTSL 3 BASIC8.75□□□□□ -1.01
HMGB1P09429 SMCO2-203ENST00000535986 1096 ntAPPRIS P2 TSL 5 BASIC8.75□□□□□ -1.01
HMGB1P09429 AC023813.3-201ENST00000561876 539 ntTSL 3 BASIC8.75□□□□□ -1.01
HMGB1P09429 AC007611.1-202ENST00000564212 854 ntTSL 3 BASIC8.75□□□□□ -1.01
HMGB1P09429 AC012447.1-201ENST00000577914 682 ntTSL 3 BASIC8.75□□□□□ -1.01
HMGB1P09429 AP005202.2-201ENST00000582386 658 ntTSL 3 BASIC8.75□□□□□ -1.01
HMGB1P09429 RN7SL25P-201ENST00000583862 260 ntBASIC8.75□□□□□ -1.01
HMGB1P09429 OR7E94P-202ENST00000601375 790 ntBASIC8.75□□□□□ -1.01
HMGB1P09429 AL390058.1-201ENST00000603834 629 ntBASIC8.75□□□□□ -1.01
HMGB1P09429 OR6L2P-201ENST00000608207 925 ntBASIC8.75□□□□□ -1.01
HMGB1P09429 AC133041.1-201ENST00000608389 201 ntTSL 3 BASIC8.75□□□□□ -1.01
HMGB1P09429 AC004448.4-210ENST00000610229 833 ntTSL 5 BASIC8.75□□□□□ -1.01
HMGB1P09429 Metazoa_SRP.189-201ENST00000614219 303 ntBASIC8.75□□□□□ -1.01
HMGB1P09429 LINC01440-208ENST00000627300 699 ntTSL 5 BASIC8.75□□□□□ -1.01
HMGB1P09429 AC116631.1-202ENST00000640984 683 ntBASIC8.75□□□□□ -1.01
HMGB1P09429 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC8.75□□□□□ -1.01
HMGB1P09429 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HMGB1P09429 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HMGB1P09429 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HMGB1P09429 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC8.75□□□□□ -1.01
HMGB1P09429 THAP9-201ENST00000302236 3808 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HMGB1P09429 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC8.75□□□□□ -1.01
HMGB1P09429 ZFP2-202ENST00000520301 2043 ntAPPRIS P1 TSL 5 BASIC8.75□□□□□ -1.01
HMGB1P09429 PDE4D-210ENST00000503258 2860 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
HMGB1P09429 IFNA13-202ENST00000610660 1539 ntAPPRIS P2 BASIC8.75□□□□□ -1.01
HMGB1P09429 NAPEPLD-209ENST00000465647 2380 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
HMGB1P09429 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HMGB1P09429 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HMGB1P09429 NDRG3-203ENST00000373773 2098 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HMGB1P09429 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HMGB1P09429 ZNF611-202ENST00000453741 4380 ntTSL 4 BASIC8.74□□□□□ -1.01
HMGB1P09429 BCL2L14-211ENST00000586576 1927 ntTSL 5 BASIC8.74□□□□□ -1.01
HMGB1P09429 FLJ42393-201ENST00000623801 2270 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC8.74□□□□□ -1.01
HMGB1P09429 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HMGB1P09429 PRLR-213ENST00000514088 1440 ntTSL 5 BASIC8.74□□□□□ -1.01
HMGB1P09429 NME8-201ENST00000199447 2312 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HMGB1P09429 SRFBP1-201ENST00000339397 2855 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HMGB1P09429 MIR365B-201ENST00000362317 111 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 RN7SKP211-201ENST00000363328 315 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 RPL36A-202ENST00000392994 691 ntTSL 2 BASIC8.74□□□□□ -1.01
HMGB1P09429 PTMAP8-201ENST00000397729 342 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 AL121977.1-201ENST00000401636 979 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 SNORA3.1-201ENST00000408166 111 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 EEF1GP7-201ENST00000422983 703 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 AP000431.1-201ENST00000424219 469 ntTSL 3 BASIC8.74□□□□□ -1.01
HMGB1P09429 MED15P9-201ENST00000424716 533 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC8.74□□□□□ -1.01
HMGB1P09429 FTH1P10-202ENST00000430907 550 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 OR5G3-201ENST00000435756 929 ntAPPRIS P1 BASIC8.74□□□□□ -1.01
HMGB1P09429 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC8.74□□□□□ -1.01
HMGB1P09429 AL355483.3-201ENST00000446686 752 ntTSL 3 BASIC8.74□□□□□ -1.01
HMGB1P09429 AC126615.1-201ENST00000470084 630 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 AC040975.1-201ENST00000472104 316 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 AC022336.1-201ENST00000475510 337 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 AC097263.1-201ENST00000496795 606 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 SSX8-201ENST00000506270 579 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 AC105345.2-201ENST00000515186 664 ntTSL 3 BASIC8.74□□□□□ -1.01
HMGB1P09429 CHCHD7-205ENST00000517933 580 ntAPPRIS P1 TSL 4 BASIC8.74□□□□□ -1.01
HMGB1P09429 AC103409.1-201ENST00000521199 564 ntTSL 5 BASIC8.74□□□□□ -1.01
HMGB1P09429 CHCHD7-215ENST00000523061 557 ntTSL 3 BASIC8.74□□□□□ -1.01
HMGB1P09429 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC8.74□□□□□ -1.01
HMGB1P09429 RD3L-201ENST00000557640 1201 ntAPPRIS P1 TSL 3 BASIC8.74□□□□□ -1.01
HMGB1P09429 AC133569.1-201ENST00000564327 373 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 TTN-AS1-215ENST00000585451 949 ntTSL 5 BASIC8.74□□□□□ -1.01
HMGB1P09429 AC243830.2-201ENST00000618067 630 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 AL158062.1-201ENST00000619632 745 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 AC025262.3-201ENST00000623666 360 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 AC022743.1-201ENST00000624990 664 ntBASIC8.74□□□□□ -1.01
HMGB1P09429 TTN-AS1-265ENST00000627661 806 ntTSL 5 BASIC8.74□□□□□ -1.01
HMGB1P09429 LINC01173-201ENST00000629370 331 ntTSL 3 BASIC8.74□□□□□ -1.01
HMGB1P09429 AC063952.4-201ENST00000634744 825 ntTSL 5 BASIC8.74□□□□□ -1.01
HMGB1P09429 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HMGB1P09429 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC8.74□□□□□ -1.01
HMGB1P09429 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC8.74□□□□□ -1.01
HMGB1P09429 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
HMGB1P09429 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HMGB1P09429 AC004672.1-201ENST00000513082 2088 ntTSL 5 BASIC8.74□□□□□ -1.01
HMGB1P09429 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
HMGB1P09429 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC8.74□□□□□ -1.01
HMGB1P09429 EEF1A1P22-201ENST00000559385 1380 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC8.73□□□□□ -1.01
HMGB1P09429 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC8.73□□□□□ -1.01
HMGB1P09429 AL391262.1-201ENST00000556558 1992 ntBASIC8.73□□□□□ -1.01
HMGB1P09429 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC8.73□□□□□ -1.01
HMGB1P09429 USPL1-201ENST00000255304 3814 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
HMGB1P09429 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms