Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
ZC3H4Q9UPT8 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
ZC3H4Q9UPT8 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
ZC3H4Q9UPT8 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
ZC3H4Q9UPT8 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
ZC3H4Q9UPT8 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
ZC3H4Q9UPT8 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
ZC3H4Q9UPT8 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
ZC3H4Q9UPT8 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
ZC3H4Q9UPT8 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
ZC3H4Q9UPT8 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
ZC3H4Q9UPT8 CD320-202ENST00000537716 1119 ntTSL 2 BASIC24.32■■□□□ 1.48
ZC3H4Q9UPT8 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC24.32■■□□□ 1.48
ZC3H4Q9UPT8 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC24.32■■□□□ 1.48
ZC3H4Q9UPT8 AL117328.2-201ENST00000624617 1940 ntBASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 EXOC3-AS1-202ENST00000623673 1663 ntBASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 HCG4P8-203ENST00000443049 980 ntBASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 C1QL1P1-201ENST00000568105 661 ntBASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 CLEC4GP1-201ENST00000596555 870 ntBASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 NDUFV2-AS1-203ENST00000608008 779 ntBASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC24.31■■□□□ 1.48
ZC3H4Q9UPT8 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 GALC-202ENST00000393568 2054 ntTSL 2 BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 AC097488.1-201ENST00000507834 756 ntBASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC24.3■■□□□ 1.48
ZC3H4Q9UPT8 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
ZC3H4Q9UPT8 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC24.29■■□□□ 1.48
ZC3H4Q9UPT8 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
ZC3H4Q9UPT8 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
ZC3H4Q9UPT8 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC24.29■■□□□ 1.48
ZC3H4Q9UPT8 COX11P1-201ENST00000489116 835 ntBASIC24.29■■□□□ 1.48
ZC3H4Q9UPT8 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC24.29■■□□□ 1.48
ZC3H4Q9UPT8 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
ZC3H4Q9UPT8 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC24.29■■□□□ 1.48
ZC3H4Q9UPT8 ABBA01031674.1-201ENST00000635145 728 ntBASIC24.29■■□□□ 1.48
ZC3H4Q9UPT8 CLN6-214ENST00000636314 442 ntTSL 3 BASIC24.29■■□□□ 1.48
ZC3H4Q9UPT8 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC24.29■■□□□ 1.48
ZC3H4Q9UPT8 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 INGX-201ENST00000359239 846 ntBASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 STK25-205ENST00000405883 1904 ntTSL 2 BASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC24.28■■□□□ 1.48
ZC3H4Q9UPT8 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 AC093458.2-201ENST00000623150 629 ntBASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
ZC3H4Q9UPT8 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
ZC3H4Q9UPT8 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
ZC3H4Q9UPT8 BET1L-202ENST00000332865 533 ntTSL 5 BASIC24.26■■□□□ 1.47
ZC3H4Q9UPT8 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
ZC3H4Q9UPT8 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms