Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS4AQ9UN37 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS4AQ9UN37 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
VPS4AQ9UN37 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
VPS4AQ9UN37 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS4AQ9UN37 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 AC128676.1-201ENST00000454392 318 ntBASIC19.26■□□□□ 0.67
VPS4AQ9UN37 AC007322.4-201ENST00000509611 723 ntBASIC19.26■□□□□ 0.67
VPS4AQ9UN37 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS4AQ9UN37 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 AC016405.3-201ENST00000607710 860 ntBASIC19.25■□□□□ 0.67
VPS4AQ9UN37 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
VPS4AQ9UN37 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 AC093787.1-201ENST00000450396 207 ntBASIC19.24■□□□□ 0.67
VPS4AQ9UN37 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS4AQ9UN37 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.23■□□□□ 0.67
VPS4AQ9UN37 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms