Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LIMD1Q9UGP4 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMD1Q9UGP4 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMD1Q9UGP4 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
LIMD1Q9UGP4 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMD1Q9UGP4 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.87■□□□□ 0.93
LIMD1Q9UGP4 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.87■□□□□ 0.93
LIMD1Q9UGP4 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.87■□□□□ 0.93
LIMD1Q9UGP4 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMD1Q9UGP4 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
LIMD1Q9UGP4 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LIMD1Q9UGP4 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.87■□□□□ 0.93
LIMD1Q9UGP4 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMD1Q9UGP4 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMD1Q9UGP4 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMD1Q9UGP4 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 AC104076.2-201ENST00000448912 469 ntBASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 AC023632.3-201ENST00000521633 145 ntBASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 AC010947.1-201ENST00000623454 693 ntBASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 AC073508.3-201ENST00000619697 1419 ntBASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMD1Q9UGP4 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LIMD1Q9UGP4 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.84■□□□□ 0.93
LIMD1Q9UGP4 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.84■□□□□ 0.93
LIMD1Q9UGP4 DUX4L26-201ENST00000489078 1255 ntBASIC20.84■□□□□ 0.93
LIMD1Q9UGP4 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.84■□□□□ 0.93
LIMD1Q9UGP4 FITM1-202ENST00000559294 800 ntBASIC20.84■□□□□ 0.93
LIMD1Q9UGP4 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.84■□□□□ 0.93
LIMD1Q9UGP4 CR392000.1-201ENST00000624770 1228 ntBASIC20.84■□□□□ 0.93
LIMD1Q9UGP4 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.84■□□□□ 0.93
LIMD1Q9UGP4 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMD1Q9UGP4 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
LIMD1Q9UGP4 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LIMD1Q9UGP4 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMD1Q9UGP4 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIMD1Q9UGP4 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LIMD1Q9UGP4 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 AL121906.2-201ENST00000621597 723 ntBASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIMD1Q9UGP4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIMD1Q9UGP4 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIMD1Q9UGP4 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 FBXW4P1-201ENST00000426721 2239 ntBASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIMD1Q9UGP4 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms