Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC026310.3-201ENST00000625186 2373 ntBASIC20.66■□□□□ 0.9
TDP1Q9NUW8 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 AC087499.1-201ENST00000418141 1075 ntBASIC20.65■□□□□ 0.9
TDP1Q9NUW8 FAM197Y1-201ENST00000421178 764 ntBASIC20.65■□□□□ 0.9
TDP1Q9NUW8 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.65■□□□□ 0.9
TDP1Q9NUW8 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TDP1Q9NUW8 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.64■□□□□ 0.9
TDP1Q9NUW8 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
TDP1Q9NUW8 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TDP1Q9NUW8 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.64■□□□□ 0.89
TDP1Q9NUW8 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
TDP1Q9NUW8 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TDP1Q9NUW8 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TDP1Q9NUW8 AC133561.5-201ENST00000635547 218 ntBASIC20.64■□□□□ 0.89
TDP1Q9NUW8 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
TDP1Q9NUW8 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TDP1Q9NUW8 DPP3P2-201ENST00000416030 1696 ntBASIC20.64■□□□□ 0.89
TDP1Q9NUW8 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 AC007225.1-201ENST00000566331 1836 ntBASIC20.63■□□□□ 0.89
TDP1Q9NUW8 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 AP002982.1-201ENST00000492365 877 ntBASIC20.63■□□□□ 0.89
TDP1Q9NUW8 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 AL353708.3-201ENST00000610272 989 ntBASIC20.63■□□□□ 0.89
TDP1Q9NUW8 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TDP1Q9NUW8 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 FAM210CP-201ENST00000445714 574 ntBASIC20.62■□□□□ 0.89
TDP1Q9NUW8 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TDP1Q9NUW8 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TDP1Q9NUW8 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TDP1Q9NUW8 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
TDP1Q9NUW8 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TDP1Q9NUW8 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TDP1Q9NUW8 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
TDP1Q9NUW8 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.61■□□□□ 0.89
TDP1Q9NUW8 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TDP1Q9NUW8 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TDP1Q9NUW8 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
TDP1Q9NUW8 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.61■□□□□ 0.89
TDP1Q9NUW8 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TDP1Q9NUW8 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TDP1Q9NUW8 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
TDP1Q9NUW8 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.6■□□□□ 0.89
TDP1Q9NUW8 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TDP1Q9NUW8 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TDP1Q9NUW8 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
TDP1Q9NUW8 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TDP1Q9NUW8 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
TDP1Q9NUW8 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
TDP1Q9NUW8 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms