Protein–RNA interactions for Protein: Q9NR96

TLR9, Toll-like receptor 9, humanhuman

Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TLR9Q9NR96 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
TLR9Q9NR96 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
TLR9Q9NR96 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.28■■□□□ 1
TLR9Q9NR96 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TLR9Q9NR96 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
TLR9Q9NR96 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TLR9Q9NR96 KRT18P22-201ENST00000402024 1347 ntBASIC21.28■■□□□ 1
TLR9Q9NR96 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.27■■□□□ 1
TLR9Q9NR96 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
TLR9Q9NR96 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
TLR9Q9NR96 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.27■■□□□ 1
TLR9Q9NR96 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.27■■□□□ 1
TLR9Q9NR96 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21.27■■□□□ 1
TLR9Q9NR96 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.27■■□□□ 1
TLR9Q9NR96 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
TLR9Q9NR96 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.27■■□□□ 1
TLR9Q9NR96 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
TLR9Q9NR96 KRT16P1-201ENST00000399124 1418 ntBASIC21.27■■□□□ 1
TLR9Q9NR96 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
TLR9Q9NR96 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.26■□□□□ 0.99
TLR9Q9NR96 CYP2D8P-201ENST00000433633 1490 ntBASIC21.26■□□□□ 0.99
TLR9Q9NR96 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TLR9Q9NR96 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TLR9Q9NR96 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
TLR9Q9NR96 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TLR9Q9NR96 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TLR9Q9NR96 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.26■□□□□ 0.99
TLR9Q9NR96 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.26■□□□□ 0.99
TLR9Q9NR96 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.26■□□□□ 0.99
TLR9Q9NR96 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.26■□□□□ 0.99
TLR9Q9NR96 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.26■□□□□ 0.99
TLR9Q9NR96 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.26■□□□□ 0.99
TLR9Q9NR96 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC21.26■□□□□ 0.99
TLR9Q9NR96 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.26■□□□□ 0.99
TLR9Q9NR96 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.26■□□□□ 0.99
TLR9Q9NR96 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TLR9Q9NR96 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.26■□□□□ 0.99
TLR9Q9NR96 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.26■□□□□ 0.99
TLR9Q9NR96 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TLR9Q9NR96 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TLR9Q9NR96 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TLR9Q9NR96 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.25■□□□□ 0.99
TLR9Q9NR96 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TLR9Q9NR96 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TLR9Q9NR96 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TLR9Q9NR96 TERF1P1-201ENST00000311003 1181 ntBASIC21.25■□□□□ 0.99
TLR9Q9NR96 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TLR9Q9NR96 AL137013.1-201ENST00000432946 1228 ntBASIC21.25■□□□□ 0.99
TLR9Q9NR96 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.25■□□□□ 0.99
TLR9Q9NR96 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.25■□□□□ 0.99
TLR9Q9NR96 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC21.25■□□□□ 0.99
TLR9Q9NR96 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.25■□□□□ 0.99
TLR9Q9NR96 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TLR9Q9NR96 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC21.25■□□□□ 0.99
TLR9Q9NR96 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.25■□□□□ 0.99
TLR9Q9NR96 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.25■□□□□ 0.99
TLR9Q9NR96 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TLR9Q9NR96 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.25■□□□□ 0.99
TLR9Q9NR96 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.25■□□□□ 0.99
TLR9Q9NR96 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC21.25■□□□□ 0.99
TLR9Q9NR96 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.25■□□□□ 0.99
TLR9Q9NR96 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TLR9Q9NR96 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TLR9Q9NR96 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TLR9Q9NR96 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TLR9Q9NR96 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.24■□□□□ 0.99
TLR9Q9NR96 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TLR9Q9NR96 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TLR9Q9NR96 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.24■□□□□ 0.99
TLR9Q9NR96 AC010947.1-201ENST00000623454 693 ntBASIC21.24■□□□□ 0.99
TLR9Q9NR96 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
TLR9Q9NR96 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TLR9Q9NR96 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TLR9Q9NR96 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
TLR9Q9NR96 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TLR9Q9NR96 AC244015.2-201ENST00000616358 1861 ntBASIC21.24■□□□□ 0.99
TLR9Q9NR96 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.23■□□□□ 0.99
TLR9Q9NR96 PTBP1P-201ENST00000554374 1601 ntBASIC21.23■□□□□ 0.99
TLR9Q9NR96 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.23■□□□□ 0.99
TLR9Q9NR96 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TLR9Q9NR96 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.23■□□□□ 0.99
TLR9Q9NR96 RNF146-204ENST00000476956 884 ntTSL 2 BASIC21.23■□□□□ 0.99
TLR9Q9NR96 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC21.23■□□□□ 0.99
TLR9Q9NR96 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TLR9Q9NR96 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.23■□□□□ 0.99
TLR9Q9NR96 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.23■□□□□ 0.99
TLR9Q9NR96 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.23■□□□□ 0.99
TLR9Q9NR96 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
TLR9Q9NR96 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TLR9Q9NR96 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TLR9Q9NR96 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TLR9Q9NR96 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC21.23■□□□□ 0.99
TLR9Q9NR96 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.23■□□□□ 0.99
TLR9Q9NR96 KRT8P20-201ENST00000423953 1409 ntBASIC21.22■□□□□ 0.99
TLR9Q9NR96 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
TLR9Q9NR96 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.22■□□□□ 0.99
TLR9Q9NR96 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.22■□□□□ 0.99
TLR9Q9NR96 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TLR9Q9NR96 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TLR9Q9NR96 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms