Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM4Q9C037 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM4Q9C037 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM4Q9C037 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM4Q9C037 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.81■□□□□ 0.76
TRIM4Q9C037 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
TRIM4Q9C037 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.81■□□□□ 0.76
TRIM4Q9C037 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM4Q9C037 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
TRIM4Q9C037 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM4Q9C037 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TRIM4Q9C037 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TRIM4Q9C037 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.81■□□□□ 0.76
TRIM4Q9C037 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
TRIM4Q9C037 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.81■□□□□ 0.76
TRIM4Q9C037 GCSHP5-201ENST00000443090 522 ntBASIC19.81■□□□□ 0.76
TRIM4Q9C037 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM4Q9C037 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.81■□□□□ 0.76
TRIM4Q9C037 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.81■□□□□ 0.76
TRIM4Q9C037 RARRES2P4-201ENST00000514074 484 ntBASIC19.81■□□□□ 0.76
TRIM4Q9C037 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM4Q9C037 AC104187.1-201ENST00000607510 612 ntBASIC19.81■□□□□ 0.76
TRIM4Q9C037 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
TRIM4Q9C037 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM4Q9C037 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.81■□□□□ 0.76
TRIM4Q9C037 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM4Q9C037 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM4Q9C037 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM4Q9C037 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM4Q9C037 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM4Q9C037 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM4Q9C037 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM4Q9C037 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM4Q9C037 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TRIM4Q9C037 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM4Q9C037 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
TRIM4Q9C037 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM4Q9C037 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.8■□□□□ 0.76
TRIM4Q9C037 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TRIM4Q9C037 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM4Q9C037 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC19.8■□□□□ 0.76
TRIM4Q9C037 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM4Q9C037 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM4Q9C037 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM4Q9C037 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM4Q9C037 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM4Q9C037 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM4Q9C037 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM4Q9C037 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
TRIM4Q9C037 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.79■□□□□ 0.76
TRIM4Q9C037 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 MIR1224-201ENST00000408193 85 ntBASIC19.79■□□□□ 0.76
TRIM4Q9C037 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM4Q9C037 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
TRIM4Q9C037 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.79■□□□□ 0.76
TRIM4Q9C037 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM4Q9C037 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.79■□□□□ 0.76
TRIM4Q9C037 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM4Q9C037 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
TRIM4Q9C037 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM4Q9C037 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM4Q9C037 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
TRIM4Q9C037 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM4Q9C037 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM4Q9C037 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM4Q9C037 AC120498.9-201ENST00000339021 3867 ntBASIC19.78■□□□□ 0.76
TRIM4Q9C037 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM4Q9C037 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM4Q9C037 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM4Q9C037 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.78■□□□□ 0.76
TRIM4Q9C037 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM4Q9C037 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.78■□□□□ 0.76
TRIM4Q9C037 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.78■□□□□ 0.76
TRIM4Q9C037 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM4Q9C037 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
TRIM4Q9C037 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM4Q9C037 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.78■□□□□ 0.76
TRIM4Q9C037 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM4Q9C037 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM4Q9C037 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.78■□□□□ 0.76
TRIM4Q9C037 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM4Q9C037 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.78■□□□□ 0.76
TRIM4Q9C037 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM4Q9C037 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM4Q9C037 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms