Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM54Q9BYV2 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 AC138932.1-201ENST00000534164 6830 ntBASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM54Q9BYV2 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 AL355472.2-201ENST00000422958 438 ntBASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 AF201337.1-201ENST00000520239 748 ntBASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TRIM54Q9BYV2 AC099778.1-201ENST00000568593 1911 ntBASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM54Q9BYV2 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 LSM12P1-201ENST00000411836 588 ntBASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 AC093787.1-201ENST00000450396 207 ntBASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 AC105036.2-201ENST00000569468 176 ntBASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM54Q9BYV2 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms