Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 AC026185.1-201ENST00000445748 174 ntBASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 AC093787.1-201ENST00000450396 207 ntBASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 RAP2CP1-201ENST00000605103 478 ntBASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
HERPUD2Q9BSE4 AC093484.2-201ENST00000580996 2166 ntBASIC20.7■□□□□ 0.91
HERPUD2Q9BSE4 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.91
HERPUD2Q9BSE4 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.7■□□□□ 0.91
HERPUD2Q9BSE4 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.7■□□□□ 0.9
HERPUD2Q9BSE4 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 KRT17P1-201ENST00000399211 1546 ntBASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
HERPUD2Q9BSE4 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HERPUD2Q9BSE4 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
HERPUD2Q9BSE4 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HERPUD2Q9BSE4 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HERPUD2Q9BSE4 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HERPUD2Q9BSE4 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.68■□□□□ 0.9
HERPUD2Q9BSE4 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.68■□□□□ 0.9
HERPUD2Q9BSE4 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.68■□□□□ 0.9
HERPUD2Q9BSE4 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.68■□□□□ 0.9
HERPUD2Q9BSE4 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.68■□□□□ 0.9
HERPUD2Q9BSE4 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HERPUD2Q9BSE4 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HERPUD2Q9BSE4 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
HERPUD2Q9BSE4 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HERPUD2Q9BSE4 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HERPUD2Q9BSE4 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 AC005332.7-201ENST00000614046 2005 ntBASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 AL031963.3-201ENST00000606441 850 ntBASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 AC010980.2-201ENST00000587099 1412 ntBASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 AC009237.14-201ENST00000609975 1594 ntBASIC20.67■□□□□ 0.9
HERPUD2Q9BSE4 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms