Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.1■□□□□ 0.97
CDX2Q99626 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDX2Q99626 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CDX2Q99626 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.1■□□□□ 0.97
CDX2Q99626 UNC93B7-201ENST00000509439 705 ntBASIC21.1■□□□□ 0.97
CDX2Q99626 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CDX2Q99626 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
CDX2Q99626 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.1■□□□□ 0.97
CDX2Q99626 GXYLT1P4-201ENST00000613576 1192 ntBASIC21.1■□□□□ 0.97
CDX2Q99626 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC21.1■□□□□ 0.97
CDX2Q99626 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21.1■□□□□ 0.97
CDX2Q99626 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDX2Q99626 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.1■□□□□ 0.97
CDX2Q99626 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDX2Q99626 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDX2Q99626 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDX2Q99626 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDX2Q99626 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDX2Q99626 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDX2Q99626 MFAP1P1-201ENST00000442257 1255 ntBASIC21.09■□□□□ 0.97
CDX2Q99626 AC009078.2-202ENST00000463353 338 ntBASIC21.09■□□□□ 0.97
CDX2Q99626 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.09■□□□□ 0.97
CDX2Q99626 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21.09■□□□□ 0.97
CDX2Q99626 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDX2Q99626 AC139530.3-201ENST00000620344 690 ntBASIC21.09■□□□□ 0.97
CDX2Q99626 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.09■□□□□ 0.97
CDX2Q99626 AC092338.2-201ENST00000568827 1415 ntBASIC21.09■□□□□ 0.97
CDX2Q99626 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.09■□□□□ 0.97
CDX2Q99626 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CDX2Q99626 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CDX2Q99626 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CDX2Q99626 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.09■□□□□ 0.97
CDX2Q99626 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
CDX2Q99626 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CDX2Q99626 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.08■□□□□ 0.97
CDX2Q99626 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CDX2Q99626 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC21.08■□□□□ 0.97
CDX2Q99626 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.08■□□□□ 0.97
CDX2Q99626 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.08■□□□□ 0.97
CDX2Q99626 NPAP1P7-201ENST00000613027 823 ntBASIC21.08■□□□□ 0.97
CDX2Q99626 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
CDX2Q99626 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDX2Q99626 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.08■□□□□ 0.96
CDX2Q99626 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
CDX2Q99626 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.08■□□□□ 0.96
CDX2Q99626 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
CDX2Q99626 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.07■□□□□ 0.96
CDX2Q99626 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
CDX2Q99626 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
CDX2Q99626 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CDX2Q99626 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDX2Q99626 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDX2Q99626 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDX2Q99626 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDX2Q99626 ZNF444P1-201ENST00000559497 298 ntBASIC21.07■□□□□ 0.96
CDX2Q99626 AL512604.3-201ENST00000569583 964 ntBASIC21.07■□□□□ 0.96
CDX2Q99626 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
CDX2Q99626 DFFB-212ENST00000625756 649 ntTSL 5 BASIC21.07■□□□□ 0.96
CDX2Q99626 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDX2Q99626 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDX2Q99626 AC020928.2-201ENST00000588717 2197 ntBASIC21.07■□□□□ 0.96
CDX2Q99626 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDX2Q99626 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDX2Q99626 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDX2Q99626 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDX2Q99626 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDX2Q99626 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDX2Q99626 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDX2Q99626 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.06■□□□□ 0.96
CDX2Q99626 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDX2Q99626 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CDX2Q99626 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDX2Q99626 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDX2Q99626 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.06■□□□□ 0.96
CDX2Q99626 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
CDX2Q99626 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDX2Q99626 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDX2Q99626 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDX2Q99626 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.06■□□□□ 0.96
CDX2Q99626 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDX2Q99626 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDX2Q99626 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDX2Q99626 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC21.05■□□□□ 0.96
CDX2Q99626 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDX2Q99626 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC21.05■□□□□ 0.96
CDX2Q99626 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.05■□□□□ 0.96
CDX2Q99626 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.05■□□□□ 0.96
CDX2Q99626 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC21.05■□□□□ 0.96
CDX2Q99626 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC21.05■□□□□ 0.96
CDX2Q99626 AC083849.1-201ENST00000615227 514 ntBASIC21.05■□□□□ 0.96
CDX2Q99626 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDX2Q99626 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.05■□□□□ 0.96
CDX2Q99626 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
CDX2Q99626 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDX2Q99626 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDX2Q99626 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.04■□□□□ 0.96
CDX2Q99626 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDX2Q99626 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDX2Q99626 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDX2Q99626 AC112907.2-201ENST00000448639 330 ntBASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms