Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.9■□□□□ 0.94
CDCA3Q99618 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDCA3Q99618 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CDCA3Q99618 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDCA3Q99618 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CDCA3Q99618 AC121338.2-201ENST00000622535 1744 ntBASIC20.9■□□□□ 0.94
CDCA3Q99618 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDCA3Q99618 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.9■□□□□ 0.94
CDCA3Q99618 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDCA3Q99618 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CDCA3Q99618 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.9■□□□□ 0.94
CDCA3Q99618 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.9■□□□□ 0.94
CDCA3Q99618 AC063952.2-201ENST00000498792 1227 ntBASIC20.9■□□□□ 0.94
CDCA3Q99618 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
CDCA3Q99618 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CDCA3Q99618 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.89■□□□□ 0.93
CDCA3Q99618 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.89■□□□□ 0.93
CDCA3Q99618 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.89■□□□□ 0.93
CDCA3Q99618 CRYGFP-201ENST00000418459 633 ntBASIC20.89■□□□□ 0.93
CDCA3Q99618 AC004980.1-204ENST00000429707 299 ntBASIC20.89■□□□□ 0.93
CDCA3Q99618 YBX1P10-201ENST00000444752 975 ntBASIC20.89■□□□□ 0.93
CDCA3Q99618 AC011506.1-201ENST00000474329 610 ntBASIC20.89■□□□□ 0.93
CDCA3Q99618 AC022616.7-201ENST00000525383 220 ntBASIC20.89■□□□□ 0.93
CDCA3Q99618 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.89■□□□□ 0.93
CDCA3Q99618 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CDCA3Q99618 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.89■□□□□ 0.93
CDCA3Q99618 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CDCA3Q99618 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.89■□□□□ 0.93
CDCA3Q99618 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDCA3Q99618 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CDCA3Q99618 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDCA3Q99618 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
CDCA3Q99618 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.88■□□□□ 0.93
CDCA3Q99618 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDCA3Q99618 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CDCA3Q99618 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.88■□□□□ 0.93
CDCA3Q99618 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDCA3Q99618 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDCA3Q99618 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDCA3Q99618 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDCA3Q99618 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDCA3Q99618 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.88■□□□□ 0.93
CDCA3Q99618 HMGA1P5-201ENST00000412453 271 ntBASIC20.88■□□□□ 0.93
CDCA3Q99618 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDCA3Q99618 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.88■□□□□ 0.93
CDCA3Q99618 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
CDCA3Q99618 FAM87A-204ENST00000613235 858 ntBASIC20.88■□□□□ 0.93
CDCA3Q99618 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDCA3Q99618 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDCA3Q99618 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDCA3Q99618 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDCA3Q99618 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDCA3Q99618 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CDCA3Q99618 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.87■□□□□ 0.93
CDCA3Q99618 ECEL1P1-201ENST00000373592 1742 ntBASIC20.87■□□□□ 0.93
CDCA3Q99618 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDCA3Q99618 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDCA3Q99618 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.87■□□□□ 0.93
CDCA3Q99618 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDCA3Q99618 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CDCA3Q99618 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.87■□□□□ 0.93
CDCA3Q99618 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.87■□□□□ 0.93
CDCA3Q99618 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
CDCA3Q99618 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.87■□□□□ 0.93
CDCA3Q99618 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDCA3Q99618 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.87■□□□□ 0.93
CDCA3Q99618 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDCA3Q99618 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.87■□□□□ 0.93
CDCA3Q99618 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDCA3Q99618 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDCA3Q99618 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDCA3Q99618 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.86■□□□□ 0.93
CDCA3Q99618 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.86■□□□□ 0.93
CDCA3Q99618 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDCA3Q99618 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.86■□□□□ 0.93
CDCA3Q99618 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CDCA3Q99618 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDCA3Q99618 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDCA3Q99618 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.86■□□□□ 0.93
CDCA3Q99618 UPK3BP1-201ENST00000428678 509 ntBASIC20.86■□□□□ 0.93
CDCA3Q99618 TUBB8P6-201ENST00000436895 1288 ntBASIC20.86■□□□□ 0.93
CDCA3Q99618 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDCA3Q99618 KRT18P16-201ENST00000510337 1294 ntBASIC20.86■□□□□ 0.93
CDCA3Q99618 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.86■□□□□ 0.93
CDCA3Q99618 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDCA3Q99618 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDCA3Q99618 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDCA3Q99618 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.86■□□□□ 0.93
CDCA3Q99618 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.86■□□□□ 0.93
CDCA3Q99618 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CDCA3Q99618 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDCA3Q99618 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.85■□□□□ 0.93
CDCA3Q99618 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CDCA3Q99618 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDCA3Q99618 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDCA3Q99618 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDCA3Q99618 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDCA3Q99618 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CDCA3Q99618 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDCA3Q99618 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms