Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHFRQ96EP1 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.41■□□□□ 0.86
CHFRQ96EP1 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHFRQ96EP1 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHFRQ96EP1 HLA-G-202ENST00000376815 851 ntBASIC20.41■□□□□ 0.86
CHFRQ96EP1 HLA-G-203ENST00000376818 1127 ntBASIC20.41■□□□□ 0.86
CHFRQ96EP1 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CHFRQ96EP1 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.41■□□□□ 0.86
CHFRQ96EP1 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHFRQ96EP1 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.41■□□□□ 0.86
CHFRQ96EP1 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.41■□□□□ 0.86
CHFRQ96EP1 AP000525.1-201ENST00000608286 694 ntBASIC20.41■□□□□ 0.86
CHFRQ96EP1 AC004264.1-201ENST00000608354 794 ntBASIC20.41■□□□□ 0.86
CHFRQ96EP1 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHFRQ96EP1 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHFRQ96EP1 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHFRQ96EP1 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHFRQ96EP1 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.41■□□□□ 0.86
CHFRQ96EP1 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.41■□□□□ 0.86
CHFRQ96EP1 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
CHFRQ96EP1 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHFRQ96EP1 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHFRQ96EP1 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.41■□□□□ 0.86
CHFRQ96EP1 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHFRQ96EP1 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHFRQ96EP1 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHFRQ96EP1 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
CHFRQ96EP1 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHFRQ96EP1 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.4■□□□□ 0.86
CHFRQ96EP1 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
CHFRQ96EP1 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CHFRQ96EP1 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.4■□□□□ 0.86
CHFRQ96EP1 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHFRQ96EP1 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
CHFRQ96EP1 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHFRQ96EP1 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.4■□□□□ 0.86
CHFRQ96EP1 AF106564.1-201ENST00000607058 2553 ntBASIC20.4■□□□□ 0.86
CHFRQ96EP1 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.4■□□□□ 0.86
CHFRQ96EP1 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
CHFRQ96EP1 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHFRQ96EP1 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CHFRQ96EP1 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.39■□□□□ 0.86
CHFRQ96EP1 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CHFRQ96EP1 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.39■□□□□ 0.86
CHFRQ96EP1 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
CHFRQ96EP1 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
CHFRQ96EP1 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHFRQ96EP1 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHFRQ96EP1 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHFRQ96EP1 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHFRQ96EP1 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHFRQ96EP1 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.85
CHFRQ96EP1 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHFRQ96EP1 AP002982.1-201ENST00000492365 877 ntBASIC20.39■□□□□ 0.85
CHFRQ96EP1 AC145285.6-201ENST00000604632 637 ntBASIC20.39■□□□□ 0.85
CHFRQ96EP1 AL031963.3-201ENST00000606441 850 ntBASIC20.39■□□□□ 0.85
CHFRQ96EP1 MIR6786-201ENST00000616843 113 ntBASIC20.39■□□□□ 0.85
CHFRQ96EP1 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.39■□□□□ 0.85
CHFRQ96EP1 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.39■□□□□ 0.85
CHFRQ96EP1 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CHFRQ96EP1 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHFRQ96EP1 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHFRQ96EP1 LINC00565-201ENST00000562710 2331 ntBASIC20.38■□□□□ 0.85
CHFRQ96EP1 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.38■□□□□ 0.85
CHFRQ96EP1 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CHFRQ96EP1 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.38■□□□□ 0.85
CHFRQ96EP1 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CHFRQ96EP1 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.38■□□□□ 0.85
CHFRQ96EP1 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.38■□□□□ 0.85
CHFRQ96EP1 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.38■□□□□ 0.85
CHFRQ96EP1 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
CHFRQ96EP1 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHFRQ96EP1 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.38■□□□□ 0.85
CHFRQ96EP1 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
CHFRQ96EP1 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHFRQ96EP1 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHFRQ96EP1 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHFRQ96EP1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.37■□□□□ 0.85
CHFRQ96EP1 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.37■□□□□ 0.85
CHFRQ96EP1 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.37■□□□□ 0.85
CHFRQ96EP1 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHFRQ96EP1 KRT8P20-201ENST00000423953 1409 ntBASIC20.37■□□□□ 0.85
CHFRQ96EP1 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
CHFRQ96EP1 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.37■□□□□ 0.85
CHFRQ96EP1 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CHFRQ96EP1 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHFRQ96EP1 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHFRQ96EP1 TMPOP1-202ENST00000424642 1267 ntBASIC20.37■□□□□ 0.85
CHFRQ96EP1 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.37■□□□□ 0.85
CHFRQ96EP1 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.37■□□□□ 0.85
CHFRQ96EP1 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.37■□□□□ 0.85
CHFRQ96EP1 AL445228.2-201ENST00000605589 952 ntBASIC20.37■□□□□ 0.85
CHFRQ96EP1 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
CHFRQ96EP1 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
CHFRQ96EP1 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CHFRQ96EP1 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.37■□□□□ 0.85
CHFRQ96EP1 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.37■□□□□ 0.85
CHFRQ96EP1 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHFRQ96EP1 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHFRQ96EP1 AC005229.4-201ENST00000610085 2198 ntBASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms