Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 DUX4L26-201ENST00000489078 1255 ntBASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.03■□□□□ 0.48
SNRNP40Q96DI7 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SNRNP40Q96DI7 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SNRNP40Q96DI7 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
SNRNP40Q96DI7 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SNRNP40Q96DI7 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SNRNP40Q96DI7 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.02■□□□□ 0.48
SNRNP40Q96DI7 AC104076.2-201ENST00000448912 469 ntBASIC18.02■□□□□ 0.48
SNRNP40Q96DI7 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.02■□□□□ 0.48
SNRNP40Q96DI7 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SNRNP40Q96DI7 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.02■□□□□ 0.48
SNRNP40Q96DI7 NTF6B-201ENST00000591913 560 ntBASIC18.02■□□□□ 0.48
SNRNP40Q96DI7 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.02■□□□□ 0.48
SNRNP40Q96DI7 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SNRNP40Q96DI7 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC18.02■□□□□ 0.47
SNRNP40Q96DI7 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
SNRNP40Q96DI7 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC18.02■□□□□ 0.47
SNRNP40Q96DI7 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SNRNP40Q96DI7 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SNRNP40Q96DI7 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SNRNP40Q96DI7 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SNRNP40Q96DI7 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SNRNP40Q96DI7 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SNRNP40Q96DI7 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SNRNP40Q96DI7 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.01■□□□□ 0.47
SNRNP40Q96DI7 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SNRNP40Q96DI7 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SNRNP40Q96DI7 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18■□□□□ 0.47
SNRNP40Q96DI7 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SNRNP40Q96DI7 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18■□□□□ 0.47
SNRNP40Q96DI7 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SNRNP40Q96DI7 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SNRNP40Q96DI7 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18■□□□□ 0.47
SNRNP40Q96DI7 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SNRNP40Q96DI7 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18■□□□□ 0.47
SNRNP40Q96DI7 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18■□□□□ 0.47
SNRNP40Q96DI7 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18■□□□□ 0.47
SNRNP40Q96DI7 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18■□□□□ 0.47
SNRNP40Q96DI7 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18■□□□□ 0.47
SNRNP40Q96DI7 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18■□□□□ 0.47
SNRNP40Q96DI7 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18■□□□□ 0.47
SNRNP40Q96DI7 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18■□□□□ 0.47
SNRNP40Q96DI7 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SNRNP40Q96DI7 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18■□□□□ 0.47
SNRNP40Q96DI7 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
SNRNP40Q96DI7 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC18■□□□□ 0.47
SNRNP40Q96DI7 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
SNRNP40Q96DI7 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SNRNP40Q96DI7 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 AC087388.1-201ENST00000571370 1112 ntBASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SNRNP40Q96DI7 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SNRNP40Q96DI7 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.98■□□□□ 0.47
SNRNP40Q96DI7 PTBP1P-201ENST00000554374 1601 ntBASIC17.98■□□□□ 0.47
SNRNP40Q96DI7 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SNRNP40Q96DI7 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.98■□□□□ 0.47
SNRNP40Q96DI7 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SNRNP40Q96DI7 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SNRNP40Q96DI7 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SNRNP40Q96DI7 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.98■□□□□ 0.47
SNRNP40Q96DI7 AC010203.1-204ENST00000548782 407 ntBASIC17.98■□□□□ 0.47
SNRNP40Q96DI7 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
SNRNP40Q96DI7 AL031985.4-201ENST00000642138 673 ntBASIC17.98■□□□□ 0.47
SNRNP40Q96DI7 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms