Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 AL353807.1-201ENST00000427475 662 ntBASIC19.53■□□□□ 0.72
LMX1AQ8TE12 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 AL355075.4-201ENST00000554988 638 ntBASIC19.53■□□□□ 0.72
LMX1AQ8TE12 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 AC026471.5-201ENST00000615068 467 ntBASIC19.53■□□□□ 0.72
LMX1AQ8TE12 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LMX1AQ8TE12 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 KRT8P17-201ENST00000453110 1448 ntBASIC19.52■□□□□ 0.72
LMX1AQ8TE12 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 AL355355.2-201ENST00000442321 338 ntBASIC19.52■□□□□ 0.72
LMX1AQ8TE12 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.52■□□□□ 0.72
LMX1AQ8TE12 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
LMX1AQ8TE12 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 FAM197Y1-201ENST00000421178 764 ntBASIC19.51■□□□□ 0.71
LMX1AQ8TE12 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 CD177P1-201ENST00000606252 935 ntBASIC19.51■□□□□ 0.71
LMX1AQ8TE12 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 AC133561.5-201ENST00000635547 218 ntBASIC19.51■□□□□ 0.71
LMX1AQ8TE12 AC006128.1-201ENST00000624704 1661 ntBASIC19.51■□□□□ 0.71
LMX1AQ8TE12 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
LMX1AQ8TE12 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LMX1AQ8TE12 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LMX1AQ8TE12 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LMX1AQ8TE12 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.5■□□□□ 0.71
LMX1AQ8TE12 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.5■□□□□ 0.71
LMX1AQ8TE12 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.5■□□□□ 0.71
LMX1AQ8TE12 AP003071.4-201ENST00000562276 1284 ntBASIC19.5■□□□□ 0.71
LMX1AQ8TE12 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.5■□□□□ 0.71
LMX1AQ8TE12 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.5■□□□□ 0.71
LMX1AQ8TE12 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.5■□□□□ 0.71
LMX1AQ8TE12 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.5■□□□□ 0.71
LMX1AQ8TE12 AC079834.2-201ENST00000609776 1949 ntBASIC19.5■□□□□ 0.71
LMX1AQ8TE12 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.5■□□□□ 0.71
LMX1AQ8TE12 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LMX1AQ8TE12 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
LMX1AQ8TE12 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LMX1AQ8TE12 LINC00565-201ENST00000562710 2331 ntBASIC19.5■□□□□ 0.71
LMX1AQ8TE12 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 DPP3P2-201ENST00000416030 1696 ntBASIC19.49■□□□□ 0.71
LMX1AQ8TE12 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 AC005229.4-201ENST00000610085 2198 ntBASIC19.49■□□□□ 0.71
LMX1AQ8TE12 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 AC087499.1-201ENST00000418141 1075 ntBASIC19.49■□□□□ 0.71
LMX1AQ8TE12 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 AP002982.1-201ENST00000492365 877 ntBASIC19.49■□□□□ 0.71
LMX1AQ8TE12 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
LMX1AQ8TE12 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.49■□□□□ 0.71
LMX1AQ8TE12 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LMX1AQ8TE12 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LMX1AQ8TE12 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
LMX1AQ8TE12 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
LMX1AQ8TE12 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LMX1AQ8TE12 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms